Variant report

Variant	rs58342123
Chromosome Location	chr1:149997305-149997306
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:149993826..149996579-chr1:149996891..149998482,2	MCF-7	breast:
2	chr1:149997237..149999198-chr1:150001935..150003672,2	MCF-7	breast:
3	chr1:149996021..149997828-chr1:150000191..150002911,2	K562	blood:
4	chr1:149856853..149859922-chr1:149994074..149998027,3	K562	blood:
5	chr1:149996036..149997673-chr1:150041872..150044139,2	MCF-7	breast:
6	chr1:149907872..149910390-chr1:149996588..149998737,2	MCF-7	breast:
7	chr1:149860175..149862937-chr1:149996186..149999039,2	K562	blood:
8	chr1:149993032..149997672-chr1:150001811..150004898,5	K562	blood:

No data

No data

No data

Variant related genes	Relation type
ENSG00000184270	Chromatin interaction
ENSG00000184260	Chromatin interaction
ENSG00000014914	Chromatin interaction
ENSG00000178096	Chromatin interaction
ENSG00000184678	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10494259	1.00[AMR][1000 genomes]
rs1061955	1.00[AMR][1000 genomes]
rs11205313	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11205314	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12022928	0.88[AFR][1000 genomes]
rs12060171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12060830	0.98[AFR][1000 genomes]
rs12064434	1.00[AMR][1000 genomes]
rs12082035	1.00[AMR][1000 genomes]
rs12091025	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12091858	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12091904	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16833063	1.00[AMR][1000 genomes]
rs16833149	0.91[AFR][1000 genomes]
rs16833175	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16833178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16838432	1.00[AMR][1000 genomes]
rs4279885	1.00[AMR][1000 genomes]
rs59054339	0.98[AFR][1000 genomes]
rs74126211	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7517085	1.00[AMR][1000 genomes]
rs9804143	1.00[AMR][1000 genomes]
rs9988489	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831537	chr1:149833357-150064655	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	431 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:149985600-150022000	Weak transcription	Brain Substantia Nigra	brain
2	chr1:149989600-149997800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:149989600-149998000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr1:149990600-149998000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:149993800-150005400	Weak transcription	Fetal Heart	heart
6	chr1:149996600-150037000	Weak transcription	Left Ventricle	heart
7	chr1:149996800-149998200	Enhancers	Stomach Mucosa	stomach
8	chr1:149997200-149997600	Enhancers	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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