Variant report

Variant	rs74126211
Chromosome Location	chr1:149986644-149986645
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:149853005..149861438-chr1:149978765..149991065,34	MCF-7	breast:
2	chr1:149869772..149872149-chr1:149985038..149987985,2	MCF-7	breast:
3	chr1:149986387..149989368-chr1:150040476..150042209,2	MCF-7	breast:
4	chr1:149984937..149987085-chr1:150017568..150019929,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000184678	Chromatin interaction
ENSG00000184270	Chromatin interaction
ENSG00000178096	Chromatin interaction
ENSG00000184260	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10494259	1.00[AMR][1000 genomes]
rs1061955	1.00[AMR][1000 genomes]
rs11205313	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11205314	1.00[AMR][1000 genomes]
rs12060171	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12060830	0.88[AFR][1000 genomes]
rs12064434	1.00[AMR][1000 genomes]
rs12082035	1.00[AMR][1000 genomes]
rs12091025	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12091858	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12091904	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16833063	1.00[AMR][1000 genomes]
rs16833149	0.86[AFR][1000 genomes]
rs16833175	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16833178	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16838432	1.00[AMR][1000 genomes]
rs4279885	1.00[AMR][1000 genomes]
rs58342123	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59054339	0.88[AFR][1000 genomes]
rs7517085	1.00[AMR][1000 genomes]
rs9804143	1.00[AMR][1000 genomes]
rs9988489	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831537	chr1:149833357-150064655	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	431 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:149982800-149994400	Weak transcription	Gastric	stomach
2	chr1:149983000-149992800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr1:149983200-149987400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr1:149983200-149987600	Weak transcription	Right Atrium	heart
5	chr1:149983400-149987600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr1:149983400-149988800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:149983400-149988800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr1:149983400-149989000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr1:149983400-149989400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr1:149983400-149989400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr1:149983600-149987600	Weak transcription	A549	lung
12	chr1:149984600-149987400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:149985000-149987600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:149985000-149989400	Weak transcription	Hela-S3	cervix
15	chr1:149985000-149989600	Weak transcription	Colonic Mucosa	Colon
16	chr1:149985000-149993200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr1:149985200-149987000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr1:149985200-149987000	Weak transcription	Adipose Nuclei	Adipose
19	chr1:149985200-149988800	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr1:149985200-149989000	Weak transcription	Stomach Mucosa	stomach
21	chr1:149985200-149989400	Weak transcription	GM12878-XiMat	blood
22	chr1:149985200-149993200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr1:149985400-149987600	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr1:149985400-149988800	Weak transcription	Fetal Intestine Large	intestine
25	chr1:149985400-149988800	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr1:149985400-149989600	Weak transcription	Brain Cingulate Gyrus	brain
27	chr1:149985400-149990200	Weak transcription	Brain Anterior Caudate	brain
28	chr1:149985400-149993000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr1:149985600-149986800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr1:149985600-149987600	Weak transcription	Osteobl	bone
31	chr1:149985600-149989000	Weak transcription	Fetal Intestine Small	intestine
32	chr1:149985600-149994000	Weak transcription	Brain Hippocampus Middle	brain
33	chr1:149985600-150022000	Weak transcription	Brain Substantia Nigra	brain
34	chr1:149986200-149990400	Enhancers	Placenta	Placenta
35	chr1:149986400-149987400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr1:149986600-149988200	Enhancers	K562	blood

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