Variant report
| Variant | rs59054339 |
|---|---|
| Chromosome Location | chr1:149993944-149993945 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:149982800-149994400 | Weak transcription | Gastric | stomach |
| 2 | chr1:149985600-149994000 | Weak transcription | Brain Hippocampus Middle | brain |
| 3 | chr1:149985600-150022000 | Weak transcription | Brain Substantia Nigra | brain |
| 4 | chr1:149989600-149997800 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
| 5 | chr1:149989600-149998000 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
| 6 | chr1:149990600-149998000 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 7 | chr1:149991000-149996000 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 8 | chr1:149992600-149994600 | Enhancers | Pancreas | Pancrea |
| 9 | chr1:149992600-149995000 | Enhancers | Stomach Mucosa | stomach |
| 10 | chr1:149992800-149994000 | Enhancers | Adipose Nuclei | Adipose |
| 11 | chr1:149992800-149994000 | Enhancers | A549 | lung |
| 12 | chr1:149992800-149994200 | Enhancers | Lung | lung |
| 13 | chr1:149992800-149994200 | Enhancers | Rectal Mucosa Donor 31 | rectum |
| 14 | chr1:149992800-149995200 | Enhancers | Fetal Intestine Large | intestine |
| 15 | chr1:149992800-149995200 | Enhancers | Fetal Intestine Small | intestine |
| 16 | chr1:149993200-149994000 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
| 17 | chr1:149993200-149994000 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 18 | chr1:149993200-149994200 | Enhancers | Skeletal Muscle Male | skeletal muscle |
| 19 | chr1:149993200-149994600 | Enhancers | Placenta | Placenta |
| 20 | chr1:149993200-149994800 | Enhancers | Foreskin Keratinocyte Primary Cells skin02 | Skin |
| 21 | chr1:149993200-149995000 | Enhancers | NHEK | skin |
| 22 | chr1:149993400-149994000 | Enhancers | iPS-20b Cell Line | embryonic stem cell |
| 23 | chr1:149993400-149994000 | Enhancers | HMEC | breast |
| 24 | chr1:149993400-149994600 | Enhancers | Fetal Kidney | kidney |
| 25 | chr1:149993400-149994800 | Enhancers | ES-I3 Cell Line | embryonic stem cell |
| 26 | chr1:149993400-149995000 | Enhancers | Foreskin Keratinocyte Primary Cells skin03 | Skin |
| 27 | chr1:149993600-149994000 | Enhancers | Duodenum Mucosa | Duodenum |
| 28 | chr1:149993600-149994400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 29 | chr1:149993600-149994600 | Enhancers | HUES48 Cell Line | embryonic stem cell |
| 30 | chr1:149993600-149995000 | Enhancers | HUES6 Cell Line | embryonic stem cell |
| 31 | chr1:149993800-149994000 | Flanking Active TSS | Liver | Liver |
| 32 | chr1:149993800-149994000 | Active TSS | Rectal Mucosa Donor 29 | rectum |
| 33 | chr1:149993800-149994000 | Flanking Active TSS | HepG2 | liver |
| 34 | chr1:149993800-149994200 | Enhancers | Esophagus | oesophagus |
| 35 | chr1:149993800-149994400 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 36 | chr1:149993800-149994600 | Enhancers | Hela-S3 | cervix |
| 37 | chr1:149993800-150005400 | Weak transcription | Fetal Heart | heart |
