The 2.0 version of rSNPBase

Variant report

Variant rs55840680
Chromosome Location chr1:150097602-150097603
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:86 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:150040400-150121400 Weak transcription Pancreas Pancrea
2 chr1:150041000-150114400 Weak transcription Right Ventricle heart
3 chr1:150052000-150116800 Weak transcription Spleen Spleen
4 chr1:150055000-150100600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
5 chr1:150055000-150120800 Weak transcription Aorta Aorta
6 chr1:150055200-150104800 Weak transcription Brain Cingulate Gyrus brain
7 chr1:150061000-150116800 Weak transcription Ovary ovary
8 chr1:150067000-150113200 Weak transcription Skeletal Muscle Male skeletal muscle
9 chr1:150067200-150101200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
10 chr1:150067400-150121200 Weak transcription Colonic Mucosa Colon
11 chr1:150069000-150113800 Weak transcription Fetal Kidney kidney
12 chr1:150069000-150121000 Weak transcription NHLF lung
13 chr1:150071000-150121000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
14 chr1:150071200-150120600 Weak transcription Rectal Mucosa Donor 31 rectum
15 chr1:150072400-150121000 Weak transcription Brain Angular Gyrus brain
16 chr1:150077200-150113000 Weak transcription Sigmoid Colon Sigmoid Colon
17 chr1:150077400-150112800 Weak transcription Fetal Heart heart
18 chr1:150079200-150121000 Weak transcription Thymus Thymus
19 chr1:150083200-150116400 Weak transcription Primary hematopoietic stem cells blood
20 chr1:150083600-150120800 Weak transcription Brain Hippocampus Middle brain
21 chr1:150084000-150110600 Weak transcription Stomach Smooth Muscle stomach
22 chr1:150085000-150100800 Weak transcription Lung lung
23 chr1:150085400-150116400 Weak transcription Primary T helper naive cells fromperipheralblood blood
24 chr1:150085400-150119000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
25 chr1:150085400-150120800 Weak transcription NH-A brain
26 chr1:150085400-150121200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
27 chr1:150085400-150121200 Weak transcription Psoas Muscle Psoas
28 chr1:150085600-150099200 Weak transcription HSMM muscle
29 chr1:150085600-150121200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr1:150085800-150121000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
31 chr1:150086800-150116400 Weak transcription Left Ventricle heart
32 chr1:150087000-150107600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
33 chr1:150087000-150116400 Weak transcription Primary monocytes fromperipheralblood blood
34 chr1:150087000-150118400 Weak transcription Fetal Intestine Large intestine
35 chr1:150087000-150121200 Weak transcription Esophagus oesophagus
36 chr1:150087000-150121200 Weak transcription Placenta Placenta
37 chr1:150087200-150099000 Weak transcription Cortex derived primary cultured neurospheres brain
38 chr1:150087200-150107400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
39 chr1:150087400-150116800 Weak transcription Skeletal Muscle Female skeletal muscle
40 chr1:150087800-150098800 Weak transcription Fetal Lung lung
41 chr1:150087800-150099600 Weak transcription Primary B cells from cord blood blood
42 chr1:150087800-150102400 Weak transcription Adipose Nuclei Adipose
43 chr1:150087800-150110200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
44 chr1:150087800-150113800 Weak transcription Duodenum Smooth Muscle Duodenum
45 chr1:150087800-150118600 Weak transcription Dnd41 blood
46 chr1:150087800-150120800 Weak transcription Brain Anterior Caudate brain
47 chr1:150087800-150121000 Weak transcription Brain Inferior Temporal Lobe brain
48 chr1:150088000-150099000 Weak transcription Fetal Brain Female brain
49 chr1:150088000-150099400 Weak transcription Fetal Muscle Leg muscle
50 chr1:150088000-150111400 Weak transcription GM12878-XiMat blood

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Last update: Aug 31, 2015