Variant report

Variant	rs11205337
Chromosome Location	chr1:150157712-150157713
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:150135480..150137843-chr1:150155550..150159423,3	MCF-7	breast:
2	chr1:149897446..149899303-chr1:150157322..150158854,2	K562	blood:
3	chr1:150119841..150122782-chr1:150157323..150159166,2	MCF-7	breast:
4	chr1:149857369..149865402-chr1:150155748..150164645,14	K562	blood:
5	chr1:150141416..150143115-chr1:150156273..150159432,3	K562	blood:
6	chr1:150148382..150150067-chr1:150155558..150157916,2	K562	blood:
7	chr1:150022553..150024320-chr1:150157694..150159816,2	K562	blood:
8	chr1:150155365..150157999-chr1:150205439..150207085,2	K562	blood:
9	chr1:150153848..150155568-chr1:150157688..150159819,2	K562	blood:
10	chr1:150038925..150041395-chr1:150157701..150159841,3	MCF-7	breast:
11	chr1:149855497..149863444-chr1:150156597..150162643,11	K562	blood:
12	chr1:149858148..149861244-chr1:150153883..150158292,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000023902	Chromatin interaction
ENSG00000136631	Chromatin interaction
ENSG00000143401	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000184270	Chromatin interaction
ENSG00000184260	Chromatin interaction
ENSG00000178096	Chromatin interaction

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10494264	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10749674	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10888569	0.80[EUR][1000 genomes]
rs1105209	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11205326	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11205329	0.80[EUR][1000 genomes]
rs11205331	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11205333	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11577346	0.81[EUR][1000 genomes]
rs11583720	0.81[EUR][1000 genomes]
rs11584091	0.84[EUR][1000 genomes]
rs11584354	0.83[EUR][1000 genomes]
rs11585955	0.81[EUR][1000 genomes]
rs11587963	0.84[EUR][1000 genomes]
rs11589801	0.95[EUR][1000 genomes]
rs11589922	0.91[EUR][1000 genomes]
rs11591200	0.89[EUR][1000 genomes]
rs12124898	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12138231	0.89[AMR][1000 genomes]
rs12139248	0.80[AMR][1000 genomes]
rs1382573	0.89[EUR][1000 genomes]
rs1545762	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1824848	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1824849	0.89[EUR][1000 genomes]
rs1824850	0.89[EUR][1000 genomes]
rs1964542	0.80[EUR][1000 genomes]
rs1975957	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2027349	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2039800	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2318763	0.85[EUR][1000 genomes]
rs3118119	0.95[EUR][1000 genomes]
rs3208509	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3850838	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3925724	0.84[EUR][1000 genomes]
rs4058847	0.82[EUR][1000 genomes]
rs4926391	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4926407	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4926408	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4926409	0.84[AMR][1000 genomes]
rs4926411	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4926412	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55802315	0.93[EUR][1000 genomes]
rs55840680	0.84[EUR][1000 genomes]
rs55909733	0.84[EUR][1000 genomes]
rs55963510	0.82[EUR][1000 genomes]
rs56188926	0.82[EUR][1000 genomes]
rs56212907	0.82[EUR][1000 genomes]
rs56349882	0.91[EUR][1000 genomes]
rs56369603	0.84[EUR][1000 genomes]
rs58426216	0.86[EUR][1000 genomes]
rs59607464	0.91[EUR][1000 genomes]
rs6657062	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6666959	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6694729	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72692886	0.83[EUR][1000 genomes]
rs72692893	0.82[EUR][1000 genomes]
rs72692895	0.81[EUR][1000 genomes]
rs72692896	0.81[EUR][1000 genomes]
rs72692897	0.81[EUR][1000 genomes]
rs72692898	0.82[EUR][1000 genomes]
rs72692899	0.82[EUR][1000 genomes]
rs72692900	0.82[EUR][1000 genomes]
rs72692901	0.81[EUR][1000 genomes]
rs72694906	0.82[EUR][1000 genomes]
rs72694908	0.82[EUR][1000 genomes]
rs72694914	0.82[EUR][1000 genomes]
rs72694915	0.82[EUR][1000 genomes]
rs72694917	0.82[EUR][1000 genomes]
rs72694918	0.82[EUR][1000 genomes]
rs72694919	0.82[EUR][1000 genomes]
rs72694923	0.82[EUR][1000 genomes]
rs72694926	0.84[EUR][1000 genomes]
rs72694927	0.83[EUR][1000 genomes]
rs72694928	0.84[EUR][1000 genomes]
rs72694933	0.84[EUR][1000 genomes]
rs72694936	0.84[EUR][1000 genomes]
rs72694942	0.84[EUR][1000 genomes]
rs72694943	0.83[EUR][1000 genomes]
rs72694944	0.84[EUR][1000 genomes]
rs72694945	0.84[EUR][1000 genomes]
rs72694946	0.83[EUR][1000 genomes]
rs72694950	0.85[EUR][1000 genomes]
rs72694951	0.84[EUR][1000 genomes]
rs72694953	0.84[EUR][1000 genomes]
rs72694954	0.86[EUR][1000 genomes]
rs72694956	0.89[EUR][1000 genomes]
rs72694957	0.89[EUR][1000 genomes]
rs72694959	0.93[EUR][1000 genomes]
rs72694960	0.93[EUR][1000 genomes]
rs72694961	0.93[EUR][1000 genomes]
rs72694962	0.94[EUR][1000 genomes]
rs72694964	0.93[EUR][1000 genomes]
rs72694965	0.98[EUR][1000 genomes]
rs7520930	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7521768	0.97[EUR][1000 genomes]
rs7521783	0.97[EUR][1000 genomes]
rs7544145	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7553622	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7555080	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv535153	chr1:150147218-150168829	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150138400-150157800	Weak transcription	Small Intestine	intestine
2	chr1:150141600-150158600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr1:150145800-150160000	Weak transcription	Right Atrium	heart
4	chr1:150146000-150159200	Weak transcription	HSMMtube	muscle
5	chr1:150147200-150159000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr1:150151000-150159200	Weak transcription	Adipose Nuclei	Adipose
7	chr1:150153000-150158400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr1:150153200-150158600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr1:150153400-150158400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr1:150153400-150158600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr1:150154200-150159000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr1:150154400-150158800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr1:150154800-150159800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr1:150155000-150158800	Weak transcription	Brain Hippocampus Middle	brain
15	chr1:150156000-150159800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr1:150156400-150159200	Weak transcription	Brain Substantia Nigra	brain
17	chr1:150156600-150158400	Weak transcription	Primary B cells from cord blood	blood
18	chr1:150156600-150158600	Weak transcription	NHEK	skin
19	chr1:150156600-150159200	Weak transcription	Brain Anterior Caudate	brain
20	chr1:150156600-150159800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr1:150156800-150158000	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr1:150156800-150158200	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr1:150156800-150158800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr1:150156800-150159200	Weak transcription	HMEC	breast
25	chr1:150157000-150157800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr1:150157000-150158000	Weak transcription	Placenta	Placenta
27	chr1:150157000-150158600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr1:150157200-150159800	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr1:150157400-150158600	Weak transcription	HepG2	liver
30	chr1:150157600-150158000	Enhancers	Hela-S3	cervix

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