The 2.0 version of rSNPBase

Variant report

Variant rs58426216
Chromosome Location chr1:150124615-150124616
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:150114800-150125200 Weak transcription Hela-S3 cervix
2 chr1:150120800-150125200 Active TSS Brain Hippocampus Middle brain
3 chr1:150120800-150125200 Active TSS Duodenum Smooth Muscle Duodenum
4 chr1:150121000-150125000 Active TSS Brain Angular Gyrus brain
5 chr1:150121200-150124800 Active TSS Lung lung
6 chr1:150121400-150125800 Active TSS Right Ventricle heart
7 chr1:150121600-150125000 Active TSS Rectal Smooth Muscle rectum
8 chr1:150121800-150125200 Active TSS Liver Liver
9 chr1:150123000-150125200 Transcr. at gene 5' and 3' IMR90 fetal lung fibroblasts Cell Line lung
10 chr1:150123000-150125400 Transcr. at gene 5' and 3' Dnd41 blood
11 chr1:150123200-150124800 Flanking Active TSS Foreskin Melanocyte Primary Cells skin03 Skin
12 chr1:150123200-150124800 Transcr. at gene 5' and 3' Fetal Stomach stomach
13 chr1:150123200-150125200 Flanking Active TSS Primary B cells from cord blood blood
14 chr1:150123200-150125200 Transcr. at gene 5' and 3' Skeletal Muscle Male skeletal muscle
15 chr1:150123200-150128600 Transcr. at gene 5' and 3' Stomach Smooth Muscle stomach
16 chr1:150123200-150135400 Weak transcription A549 lung
17 chr1:150123400-150124800 Flanking Active TSS Primary T helper naive cells fromperipheralblood blood
18 chr1:150123400-150128000 Weak transcription Gastric stomach
19 chr1:150123400-150134400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
20 chr1:150123400-150134400 Weak transcription NHEK skin
21 chr1:150123600-150124800 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
22 chr1:150123600-150125400 Transcr. at gene 5' and 3' NH-A brain
23 chr1:150123600-150127000 Transcr. at gene 5' and 3' Brain Germinal Matrix brain
24 chr1:150123600-150127000 Weak transcription Small Intestine intestine
25 chr1:150123800-150124800 Transcr. at gene 5' and 3' iPS-20b Cell Line embryonic stem cell
26 chr1:150123800-150124800 Transcr. at gene 5' and 3' Fetal Intestine Large intestine
27 chr1:150123800-150125000 Enhancers HepG2 liver
28 chr1:150123800-150125600 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
29 chr1:150123800-150125800 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
30 chr1:150123800-150126200 Weak transcription Ovary ovary
31 chr1:150123800-150127400 Genic enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
32 chr1:150123800-150127800 Transcr. at gene 5' and 3' Monocytes-CD14+_RO01746 blood
33 chr1:150123800-150131200 Weak transcription Pancreas Pancrea
34 chr1:150123800-150134200 Weak transcription HMEC breast
35 chr1:150123800-150134600 Weak transcription Pancreatic Islets Pancreatic Islet
36 chr1:150124000-150124800 Transcr. at gene 5' and 3' HUES64 Cell Line embryonic stem cell
37 chr1:150124000-150124800 Transcr. at gene 5' and 3' Breast Myoepithelial Primary Cells Breast
38 chr1:150124000-150124800 Transcr. at gene 5' and 3' Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
39 chr1:150124000-150124800 Flanking Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
40 chr1:150124000-150125200 Transcr. at gene 5' and 3' Primary hematopoietic stem cells G-CSF-mobilized Male --
41 chr1:150124000-150125400 Transcr. at gene 5' and 3' HSMM muscle
42 chr1:150124000-150125800 Transcr. at gene 5' and 3' Primary monocytes fromperipheralblood blood
43 chr1:150124000-150126200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
44 chr1:150124000-150128000 Transcr. at gene 5' and 3' GM12878-XiMat blood
45 chr1:150124200-150124800 Enhancers H1 Cell Line embryonic stem cell
46 chr1:150124200-150124800 Enhancers HUES6 Cell Line embryonic stem cell
47 chr1:150124200-150125000 Transcr. at gene 5' and 3' Cortex derived primary cultured neurospheres brain
48 chr1:150124200-150125200 Enhancers ES-I3 Cell Line embryonic stem cell
49 chr1:150124200-150125200 Weak transcription Brain Inferior Temporal Lobe brain
50 chr1:150124200-150125200 Transcr. at gene 5' and 3' Skeletal Muscle Female skeletal muscle

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015