Variant report

Variant	rs67880399
Chromosome Location	chr1:150184102-150184103
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:150182307..150185860-chr1:150205787..150209000,3	K562	blood:
2	chr1:150182307..150184946-chr1:150207119..150209000,2	K562	blood:
3	chr1:149854142..149859760-chr1:150182757..150186625,7	MCF-7	breast:
4	chr1:150184020..150189547-chr1:150205905..150210191,12	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CA14-3	chr1:150183930-150184221	NONHSAT006277

Variant related genes	Relation type
ENSG00000184260	Chromatin interaction
ENSG00000222222	Chromatin interaction
ENSG00000143401	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000178096	Chromatin interaction
ENSG00000184270	Chromatin interaction

Extended variants
information (count: 221 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:220)

rs_ID	r²[population]
rs10494261	1.00[ASN][1000 genomes]
rs10494264	1.00[ASN][1000 genomes]
rs10749674	1.00[ASN][1000 genomes]
rs10888568	1.00[ASN][1000 genomes]
rs1105209	1.00[ASN][1000 genomes]
rs11205317	1.00[ASN][1000 genomes]
rs11205319	1.00[ASN][1000 genomes]
rs11205321	1.00[ASN][1000 genomes]
rs11205326	1.00[ASN][1000 genomes]
rs11205331	1.00[ASN][1000 genomes]
rs11205333	1.00[ASN][1000 genomes]
rs11205361	1.00[ASN][1000 genomes]
rs11205362	1.00[ASN][1000 genomes]
rs11205374	1.00[ASN][1000 genomes]
rs11548267	1.00[ASN][1000 genomes]
rs11576289	1.00[ASN][1000 genomes]
rs11576293	1.00[ASN][1000 genomes]
rs11576997	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11577346	1.00[ASN][1000 genomes]
rs11578585	1.00[ASN][1000 genomes]
rs11579087	0.83[EUR][1000 genomes]
rs11579341	1.00[ASN][1000 genomes]
rs11580234	1.00[ASN][1000 genomes]
rs11580307	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11582835	1.00[ASN][1000 genomes]
rs11583720	1.00[ASN][1000 genomes]
rs11584070	1.00[ASN][1000 genomes]
rs11584091	1.00[ASN][1000 genomes]
rs11584354	1.00[ASN][1000 genomes]
rs11584606	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11584761	1.00[ASN][1000 genomes]
rs11585955	1.00[ASN][1000 genomes]
rs11586880	1.00[ASN][1000 genomes]
rs11587606	1.00[ASN][1000 genomes]
rs11587682	1.00[ASN][1000 genomes]
rs11587837	1.00[ASN][1000 genomes]
rs11587963	1.00[ASN][1000 genomes]
rs11588221	1.00[ASN][1000 genomes]
rs11588837	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11589585	1.00[ASN][1000 genomes]
rs11589801	1.00[ASN][1000 genomes]
rs11589922	1.00[ASN][1000 genomes]
rs11591200	1.00[ASN][1000 genomes]
rs12058090	1.00[ASN][1000 genomes]
rs12058502	1.00[ASN][1000 genomes]
rs12060027	1.00[ASN][1000 genomes]
rs12060211	1.00[ASN][1000 genomes]
rs12060830	1.00[ASN][1000 genomes]
rs12061196	1.00[ASN][1000 genomes]
rs12061565	1.00[ASN][1000 genomes]
rs12061856	1.00[ASN][1000 genomes]
rs12062861	1.00[ASN][1000 genomes]
rs12063059	1.00[ASN][1000 genomes]
rs12063281	1.00[ASN][1000 genomes]
rs12063329	1.00[ASN][1000 genomes]
rs12065681	1.00[ASN][1000 genomes]
rs12066132	1.00[ASN][1000 genomes]
rs12066293	1.00[ASN][1000 genomes]
rs12067422	1.00[ASN][1000 genomes]
rs12073359	1.00[ASN][1000 genomes]
rs12074281	1.00[ASN][1000 genomes]
rs12077623	1.00[ASN][1000 genomes]
rs12081082	1.00[ASN][1000 genomes]
rs12086155	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12087578	1.00[ASN][1000 genomes]
rs12093499	1.00[ASN][1000 genomes]
rs12098106	1.00[ASN][1000 genomes]
rs12119320	1.00[ASN][1000 genomes]
rs12120683	1.00[ASN][1000 genomes]
rs12120867	1.00[ASN][1000 genomes]
rs12123044	1.00[ASN][1000 genomes]
rs12124898	1.00[ASN][1000 genomes]
rs12126312	1.00[ASN][1000 genomes]
rs12128385	1.00[ASN][1000 genomes]
rs12138231	1.00[ASN][1000 genomes]
rs12138787	1.00[ASN][1000 genomes]
rs12139286	1.00[ASN][1000 genomes]
rs12142178	1.00[ASN][1000 genomes]
rs12142331	1.00[ASN][1000 genomes]
rs12144958	1.00[ASN][1000 genomes]
rs12145630	1.00[ASN][1000 genomes]
rs1339494	1.00[ASN][1000 genomes]
rs1339495	1.00[ASN][1000 genomes]
rs1382573	1.00[ASN][1000 genomes]
rs1545762	1.00[ASN][1000 genomes]
rs16833149	1.00[ASN][1000 genomes]
rs16835254	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16835780	1.00[ASN][1000 genomes]
rs1824849	1.00[ASN][1000 genomes]
rs1824850	1.00[ASN][1000 genomes]
rs1964542	1.00[ASN][1000 genomes]
rs1975957	1.00[ASN][1000 genomes]
rs2027349	1.00[ASN][1000 genomes]
rs2039800	1.00[ASN][1000 genomes]
rs2133128	1.00[ASN][1000 genomes]
rs2318763	1.00[ASN][1000 genomes]
rs2319280	1.00[ASN][1000 genomes]
rs28366567	1.00[ASN][1000 genomes]
rs28443768	1.00[ASN][1000 genomes]
rs28560019	1.00[ASN][1000 genomes]
rs28560140	1.00[ASN][1000 genomes]
rs28660389	1.00[ASN][1000 genomes]
rs28753817	1.00[ASN][1000 genomes]
rs3118119	1.00[ASN][1000 genomes]
rs3208509	1.00[ASN][1000 genomes]
rs34755378	1.00[ASN][1000 genomes]
rs3850838	1.00[ASN][1000 genomes]
rs3925724	1.00[ASN][1000 genomes]
rs4058847	1.00[ASN][1000 genomes]
rs41300865	1.00[ASN][1000 genomes]
rs4265470	1.00[ASN][1000 genomes]
rs4926407	1.00[ASN][1000 genomes]
rs4926408	1.00[ASN][1000 genomes]
rs4926411	1.00[ASN][1000 genomes]
rs4926412	1.00[ASN][1000 genomes]
rs55633125	1.00[ASN][1000 genomes]
rs55647342	1.00[ASN][1000 genomes]
rs55802315	1.00[ASN][1000 genomes]
rs55840680	1.00[ASN][1000 genomes]
rs55840906	1.00[ASN][1000 genomes]
rs55909733	1.00[ASN][1000 genomes]
rs55918911	1.00[ASN][1000 genomes]
rs55963510	1.00[ASN][1000 genomes]
rs55973252	1.00[ASN][1000 genomes]
rs56125600	1.00[ASN][1000 genomes]
rs56133109	1.00[ASN][1000 genomes]
rs56188926	1.00[ASN][1000 genomes]
rs56212907	1.00[ASN][1000 genomes]
rs56305459	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56349882	1.00[ASN][1000 genomes]
rs56369603	1.00[ASN][1000 genomes]
rs56892994	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58395667	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58426216	1.00[ASN][1000 genomes]
rs59054339	1.00[ASN][1000 genomes]
rs59607464	1.00[ASN][1000 genomes]
rs6657062	1.00[ASN][1000 genomes]
rs66649150	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6666959	1.00[ASN][1000 genomes]
rs6687454	1.00[ASN][1000 genomes]
rs67450539	1.00[ASN][1000 genomes]
rs72692834	1.00[ASN][1000 genomes]
rs72692835	1.00[ASN][1000 genomes]
rs72692837	1.00[ASN][1000 genomes]
rs72692840	1.00[ASN][1000 genomes]
rs72692842	1.00[ASN][1000 genomes]
rs72692843	1.00[ASN][1000 genomes]
rs72692849	1.00[ASN][1000 genomes]
rs72692851	1.00[ASN][1000 genomes]
rs72692854	1.00[ASN][1000 genomes]
rs72692857	1.00[ASN][1000 genomes]
rs72692861	1.00[ASN][1000 genomes]
rs72692862	1.00[ASN][1000 genomes]
rs72692865	1.00[ASN][1000 genomes]
rs72692866	1.00[ASN][1000 genomes]
rs72692869	1.00[ASN][1000 genomes]
rs72692886	1.00[ASN][1000 genomes]
rs72692893	1.00[ASN][1000 genomes]
rs72692895	1.00[ASN][1000 genomes]
rs72692896	1.00[ASN][1000 genomes]
rs72692897	1.00[ASN][1000 genomes]
rs72692898	1.00[ASN][1000 genomes]
rs72692899	1.00[ASN][1000 genomes]
rs72692900	1.00[ASN][1000 genomes]
rs72692901	1.00[ASN][1000 genomes]
rs72694905	1.00[ASN][1000 genomes]
rs72694906	1.00[ASN][1000 genomes]
rs72694908	1.00[ASN][1000 genomes]
rs72694914	1.00[ASN][1000 genomes]
rs72694915	1.00[ASN][1000 genomes]
rs72694917	1.00[ASN][1000 genomes]
rs72694918	1.00[ASN][1000 genomes]
rs72694919	1.00[ASN][1000 genomes]
rs72694923	1.00[ASN][1000 genomes]
rs72694926	1.00[ASN][1000 genomes]
rs72694927	1.00[ASN][1000 genomes]
rs72694928	1.00[ASN][1000 genomes]
rs72694933	1.00[ASN][1000 genomes]
rs72694936	1.00[ASN][1000 genomes]
rs72694942	1.00[ASN][1000 genomes]
rs72694944	1.00[ASN][1000 genomes]
rs72694945	1.00[ASN][1000 genomes]
rs72694946	1.00[ASN][1000 genomes]
rs72694950	1.00[ASN][1000 genomes]
rs72694951	1.00[ASN][1000 genomes]
rs72694953	1.00[ASN][1000 genomes]
rs72694956	1.00[ASN][1000 genomes]
rs72694957	1.00[ASN][1000 genomes]
rs72694959	1.00[ASN][1000 genomes]
rs72694960	1.00[ASN][1000 genomes]
rs72694961	1.00[ASN][1000 genomes]
rs72694962	1.00[ASN][1000 genomes]
rs72694964	1.00[ASN][1000 genomes]
rs72694965	1.00[ASN][1000 genomes]
rs72694969	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694972	1.00[EUR][1000 genomes]
rs72694974	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694990	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694993	1.00[ASN][1000 genomes]
rs72696807	1.00[ASN][1000 genomes]
rs72696808	1.00[ASN][1000 genomes]
rs72696824	1.00[ASN][1000 genomes]
rs72696828	1.00[ASN][1000 genomes]
rs72696841	1.00[ASN][1000 genomes]
rs72696848	1.00[ASN][1000 genomes]
rs72696852	1.00[ASN][1000 genomes]
rs72696859	1.00[ASN][1000 genomes]
rs72696873	1.00[ASN][1000 genomes]
rs7519918	1.00[ASN][1000 genomes]
rs7520930	1.00[ASN][1000 genomes]
rs7521768	1.00[ASN][1000 genomes]
rs7521783	1.00[ASN][1000 genomes]
rs7530922	1.00[ASN][1000 genomes]
rs7532876	1.00[ASN][1000 genomes]
rs7540847	1.00[ASN][1000 genomes]
rs7550323	1.00[ASN][1000 genomes]
rs7553622	1.00[ASN][1000 genomes]
rs7554367	1.00[ASN][1000 genomes]
rs942453	1.00[ASN][1000 genomes]
rs9662055	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150180200-150185200	Weak transcription	Hela-S3	cervix
2	chr1:150180200-150185400	Weak transcription	Liver	Liver
3	chr1:150180200-150185400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr1:150180200-150185400	Weak transcription	Fetal Intestine Large	intestine
5	chr1:150180200-150185400	Weak transcription	Fetal Intestine Small	intestine
6	chr1:150180200-150185400	Weak transcription	Stomach Mucosa	stomach
7	chr1:150180200-150185400	Weak transcription	A549	lung
8	chr1:150180200-150185400	Weak transcription	HepG2	liver
9	chr1:150180400-150185400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr1:150183400-150185400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr1:150184000-150184200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links