The 2.0 version of rSNPBase

Variant report

Variant rs12138787
Chromosome Location chr1:150246070-150246071
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:91 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:150241800-150253400 Weak transcription Ovary ovary
2 chr1:150241800-150253800 Weak transcription Esophagus oesophagus
3 chr1:150241800-150253800 Weak transcription Gastric stomach
4 chr1:150241800-150254200 Weak transcription Spleen Spleen
5 chr1:150242000-150253400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
6 chr1:150242000-150253800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
7 chr1:150242200-150248200 Weak transcription Duodenum Mucosa Duodenum
8 chr1:150242200-150248600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
9 chr1:150242200-150250000 Weak transcription Liver Liver
10 chr1:150242200-150252600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
11 chr1:150242200-150253200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
12 chr1:150242200-150253200 Weak transcription Primary T killer memory cells from peripheral blood blood
13 chr1:150242200-150253400 Weak transcription Primary T cells from cord blood blood
14 chr1:150242200-150253400 Weak transcription Primary T helper naive cells fromperipheralblood blood
15 chr1:150242400-150248200 Weak transcription Primary T helper cells fromperipheralblood blood
16 chr1:150242400-150253000 Weak transcription Primary T cells fromperipheralblood blood
17 chr1:150242400-150253200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
18 chr1:150242600-150253200 Weak transcription Primary T helper cells PMA-I stimulated --
19 chr1:150244000-150246800 Enhancers Primary monocytes fromperipheralblood blood
20 chr1:150244600-150246200 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
21 chr1:150244600-150246400 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
22 chr1:150244600-150246400 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
23 chr1:150244600-150246600 Flanking Active TSS H9 Derived Neuron Cultured Cells ES cell derived
24 chr1:150244600-150246600 Flanking Active TSS Osteobl bone
25 chr1:150244800-150246400 Active TSS Rectal Smooth Muscle rectum
26 chr1:150244800-150246600 Flanking Active TSS Monocytes-CD14+_RO01746 blood
27 chr1:150244800-150250600 Weak transcription HepG2 liver
28 chr1:150245000-150246400 Flanking Active TSS HUVEC blood vessel
29 chr1:150245000-150246400 Flanking Active TSS NH-A brain
30 chr1:150245200-150246400 Flanking Active TSS H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
31 chr1:150245200-150246400 Flanking Active TSS GM12878-XiMat blood
32 chr1:150245400-150253600 Weak transcription Brain Angular Gyrus brain
33 chr1:150245600-150246200 Flanking Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
34 chr1:150245600-150246200 Genic enhancers Fetal Adrenal Gland Adrenal Gland
35 chr1:150245600-150246400 Enhancers HUES6 Cell Line embryonic stem cell
36 chr1:150245600-150246400 Enhancers ES-UCSF4 Cell Line embryonic stem cell
37 chr1:150245600-150246600 Enhancers Brain Cingulate Gyrus brain
38 chr1:150245600-150246600 Enhancers Psoas Muscle Psoas
39 chr1:150245600-150247400 Weak transcription Fetal Intestine Small intestine
40 chr1:150245600-150250600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
41 chr1:150245600-150252800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
42 chr1:150245600-150252800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
43 chr1:150245600-150252800 Weak transcription Rectal Mucosa Donor 31 rectum
44 chr1:150245600-150253200 Weak transcription Skeletal Muscle Male skeletal muscle
45 chr1:150245600-150253400 Weak transcription Placenta Placenta
46 chr1:150245600-150253800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
47 chr1:150245600-150253800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
48 chr1:150245600-150253800 Weak transcription Primary hematopoietic stem cells short term culture blood
49 chr1:150245600-150253800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
50 chr1:150245600-150254200 Weak transcription Lung lung

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Last update: Aug 31, 2015