Variant report

Variant	rs7554367
Chromosome Location	chr1:150019580-150019581
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:149982338..149984258-chr1:150017954..150020587,2	MCF-7	breast:
2	chr1:150019180..150020773-chr1:150021063..150023287,2	MCF-7	breast:
3	chr1:149858084..149861835-chr1:150019287..150023815,6	K562	blood:
4	chr1:150017927..150020825-chr1:150022056..150024781,3	MCF-7	breast:
5	chr1:149856755..149861735-chr1:150014773..150024288,21	MCF-7	breast:
6	chr1:150014322..150016066-chr1:150017789..150019617,2	K562	blood:
7	chr1:149984937..149987085-chr1:150017568..150019929,2	MCF-7	breast:
8	chr1:149858368..149864477-chr1:150018495..150024155,9	K562	blood:
9	chr1:150014674..150017255-chr1:150017933..150019625,2	MCF-7	breast:
10	chr1:150011021..150013684-chr1:150016711..150019672,2	MCF-7	breast:
11	chr1:150013902..150015822-chr1:150017587..150020723,3	K562	blood:
12	chr1:149855348..149862315-chr1:150015478..150024375,18	MCF-7	breast:
13	chr1:149937397..149939684-chr1:150018242..150019838,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000184678	Chromatin interaction
ENSG00000178096	Chromatin interaction
ENSG00000184270	Chromatin interaction
ENSG00000163113	Chromatin interaction
ENSG00000184260	Chromatin interaction

Extended variants
information (count: 229 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:226)

rs_ID	r²[population]
rs10494261	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10494264	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10494363	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10749674	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10888568	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10888569	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10888572	0.85[AFR][1000 genomes]
rs1105209	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11205307	1.00[ASN][1000 genomes]
rs11205308	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11205316	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11205317	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11205319	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11205321	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11205326	0.89[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11205331	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11205333	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11548267	1.00[ASN][1000 genomes]
rs11576997	1.00[ASN][1000 genomes]
rs11577346	0.89[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11580307	1.00[ASN][1000 genomes]
rs11583720	0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11584091	0.86[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11584354	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11584606	1.00[ASN][1000 genomes]
rs11585955	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11587963	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11588837	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11589585	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11589801	1.00[ASN][1000 genomes]
rs11589922	1.00[ASN][1000 genomes]
rs11591200	0.89[CEU][hapmap];1.00[CHB][hapmap];0.93[TSI][hapmap];1.00[ASN][1000 genomes]
rs12058090	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12058502	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12060027	0.89[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12060211	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12060830	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12061167	0.92[EUR][1000 genomes]
rs12061196	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12061565	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12061856	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12062861	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12063059	0.89[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12063281	0.88[CEU][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12063329	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12064532	0.88[EUR][1000 genomes]
rs12065681	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12066132	0.89[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12066293	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12067422	0.88[CEU][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12073359	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12074281	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12077623	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12078573	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12081082	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12086155	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12087578	1.00[ASN][1000 genomes]
rs12093499	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12098106	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12124898	0.84[CEU][hapmap];1.00[CHB][hapmap];0.84[TSI][hapmap];1.00[ASN][1000 genomes]
rs12138231	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12138787	1.00[ASN][1000 genomes]
rs12139248	0.81[AFR][1000 genomes]
rs1339494	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1339495	0.89[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1382573	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1545762	0.93[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16833149	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16835254	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16836630	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17581380	1.00[CHB][hapmap]
rs17643644	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1804775	1.00[ASN][1000 genomes]
rs1824847	0.89[AFR][1000 genomes]
rs1824849	1.00[ASN][1000 genomes]
rs1824850	1.00[ASN][1000 genomes]
rs1964542	1.00[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1975957	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2027349	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2039800	0.93[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2044891	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2169895	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2198194	1.00[ASN][1000 genomes]
rs2279171	1.00[CHB][hapmap]
rs2318763	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2319280	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28366567	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28443768	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28560140	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28660389	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28753817	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3118119	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs3208509	0.86[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34755378	1.00[ASN][1000 genomes]
rs35230744	1.00[ASN][1000 genomes]
rs3850838	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3925724	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4058847	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41264630	1.00[ASN][1000 genomes]
rs41265185	1.00[ASN][1000 genomes]
rs41302101	1.00[ASN][1000 genomes]
rs45548131	1.00[ASN][1000 genomes]
rs4926388	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4926406	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[YRI][hapmap]
rs4926407	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4926408	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4926409	0.89[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes]
rs4926411	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4926412	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs55633125	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55647342	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55705001	1.00[ASN][1000 genomes]
rs55802315	1.00[ASN][1000 genomes]
rs55840680	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55840906	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55909733	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55918911	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55963510	1.00[ASN][1000 genomes]
rs56125600	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56188926	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56212907	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56265028	1.00[ASN][1000 genomes]
rs56305459	1.00[ASN][1000 genomes]
rs56349882	1.00[ASN][1000 genomes]
rs56369603	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56892994	1.00[ASN][1000 genomes]
rs57926929	0.83[EUR][1000 genomes]
rs58395667	1.00[ASN][1000 genomes]
rs58426216	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59054339	1.00[ASN][1000 genomes]
rs59607464	1.00[ASN][1000 genomes]
rs6657062	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66649150	1.00[ASN][1000 genomes]
rs6666959	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6687454	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6694729	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs67450539	1.00[ASN][1000 genomes]
rs67880399	1.00[ASN][1000 genomes]
rs68144650	1.00[ASN][1000 genomes]
rs72692803	1.00[ASN][1000 genomes]
rs72692804	1.00[ASN][1000 genomes]
rs72692805	1.00[ASN][1000 genomes]
rs72692807	1.00[ASN][1000 genomes]
rs72692808	1.00[ASN][1000 genomes]
rs72692810	1.00[ASN][1000 genomes]
rs72692811	1.00[ASN][1000 genomes]
rs72692812	1.00[ASN][1000 genomes]
rs72692813	1.00[ASN][1000 genomes]
rs72692814	1.00[ASN][1000 genomes]
rs72692816	1.00[ASN][1000 genomes]
rs72692818	1.00[ASN][1000 genomes]
rs72692819	1.00[ASN][1000 genomes]
rs72692834	1.00[ASN][1000 genomes]
rs72692835	1.00[ASN][1000 genomes]
rs72692837	1.00[ASN][1000 genomes]
rs72692840	1.00[ASN][1000 genomes]
rs72692842	1.00[ASN][1000 genomes]
rs72692843	1.00[ASN][1000 genomes]
rs72692849	1.00[ASN][1000 genomes]
rs72692851	1.00[ASN][1000 genomes]
rs72692854	1.00[ASN][1000 genomes]
rs72692857	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692861	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692862	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692865	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692866	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692869	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692886	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692893	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692895	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692896	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692897	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692898	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692899	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692900	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692901	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694905	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694906	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694908	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694914	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694915	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694917	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694918	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694919	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694923	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694926	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694927	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694928	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694933	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694936	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694942	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694943	0.83[EUR][1000 genomes]
rs72694944	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694945	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694946	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694950	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694951	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694953	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694954	0.81[EUR][1000 genomes]
rs72694956	1.00[ASN][1000 genomes]
rs72694957	1.00[ASN][1000 genomes]
rs72694959	1.00[ASN][1000 genomes]
rs72694960	1.00[ASN][1000 genomes]
rs72694961	1.00[ASN][1000 genomes]
rs72694962	1.00[ASN][1000 genomes]
rs72694964	1.00[ASN][1000 genomes]
rs72694965	1.00[ASN][1000 genomes]
rs72694969	1.00[ASN][1000 genomes]
rs72694974	1.00[ASN][1000 genomes]
rs72694990	1.00[ASN][1000 genomes]
rs72694993	1.00[ASN][1000 genomes]
rs72708162	1.00[ASN][1000 genomes]
rs73008195	1.00[ASN][1000 genomes]
rs7519918	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7520930	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7521768	0.84[CEU][hapmap];1.00[CHB][hapmap];0.87[TSI][hapmap];1.00[ASN][1000 genomes]
rs7521783	0.84[CEU][hapmap];1.00[CHB][hapmap];0.87[TSI][hapmap];1.00[ASN][1000 genomes]
rs7530922	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7532876	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7540847	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7544531	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7550323	0.89[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7550350	1.00[CHB][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7553622	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7555080	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9662055	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831537	chr1:149833357-150064655	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	431 gene(s)	inside rSNPs	diseases
2	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
3	nsv947321	chr1:150007387-150030042	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs7554367	SCNM1	cis	cerebellum	SCAN
rs7554367	LIX1L	cis	cerebellum	SCAN
rs7554367	CTSS	cis	cerebellum	SCAN
rs7554367	CTSK	cis	cerebellum	SCAN
rs7554367	PLEKHO1	cis	cerebellum	SCAN
rs7554367	POLR3GL	cis	cerebellum	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:149985600-150022000	Weak transcription	Brain Substantia Nigra	brain
2	chr1:149996600-150037000	Weak transcription	Left Ventricle	heart
3	chr1:150003800-150022400	Weak transcription	Fetal Intestine Small	intestine
4	chr1:150006600-150022400	Weak transcription	Brain Hippocampus Middle	brain
5	chr1:150016800-150024000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:150017600-150022400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr1:150017600-150026200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr1:150017600-150037600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr1:150017800-150025800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:150017800-150026000	Weak transcription	Osteobl	bone
11	chr1:150018000-150022600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr1:150018000-150031600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr1:150018000-150033400	Weak transcription	Fetal Stomach	stomach
14	chr1:150018200-150022400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr1:150018200-150038600	Weak transcription	Fetal Muscle Trunk	muscle
16	chr1:150018400-150022400	Weak transcription	Brain Cingulate Gyrus	brain
17	chr1:150018400-150024000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr1:150018600-150022400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr1:150018600-150022800	Weak transcription	Colon Smooth Muscle	Colon
20	chr1:150019000-150021000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr1:150019400-150023200	Weak transcription	A549	lung

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