Variant report

Variant	rs4926388
Chromosome Location	chr1:150016659-150016660
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:150014674..150017255-chr1:150017933..150019625,2	MCF-7	breast:
2	chr1:150015530..150017614-chr1:150019646..150022042,2	MCF-7	breast:
3	chr1:149856755..149861735-chr1:150014773..150024288,21	MCF-7	breast:
4	chr1:149931408..149935324-chr1:150013770..150016857,4	K562	blood:
5	chr1:149855348..149862315-chr1:150015478..150024375,18	MCF-7	breast:
6	chr1:149908283..149911513-chr1:150013231..150017247,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000184260	Chromatin interaction
ENSG00000184270	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000014914	Chromatin interaction
ENSG00000178096	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10494264	0.81[AMR][1000 genomes]
rs10749674	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10888568	0.86[EUR][1000 genomes]
rs10888569	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10888572	0.86[AFR][1000 genomes]
rs11205316	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs11205317	0.85[EUR][1000 genomes]
rs11205319	0.85[EUR][1000 genomes]
rs11205321	0.83[EUR][1000 genomes]
rs11205326	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11205331	0.91[AFR][1000 genomes]
rs11205333	0.88[AFR][1000 genomes]
rs11589585	0.85[EUR][1000 genomes]
rs12058090	0.85[EUR][1000 genomes]
rs12058502	0.83[EUR][1000 genomes]
rs12060027	0.86[EUR][1000 genomes]
rs12060211	0.85[EUR][1000 genomes]
rs12061167	0.85[EUR][1000 genomes]
rs12061196	0.85[EUR][1000 genomes]
rs12061565	0.84[EUR][1000 genomes]
rs12061856	0.84[EUR][1000 genomes]
rs12062861	0.83[EUR][1000 genomes]
rs12063059	0.85[EUR][1000 genomes]
rs12063281	0.83[EUR][1000 genomes]
rs12063329	0.83[EUR][1000 genomes]
rs12064532	0.81[EUR][1000 genomes]
rs12065681	0.85[EUR][1000 genomes]
rs12066132	0.85[EUR][1000 genomes]
rs12066293	0.85[EUR][1000 genomes]
rs12067422	0.85[EUR][1000 genomes]
rs12073359	0.84[EUR][1000 genomes]
rs12074281	0.83[EUR][1000 genomes]
rs12093499	0.83[EUR][1000 genomes]
rs12098106	0.84[EUR][1000 genomes]
rs12139248	0.82[AFR][1000 genomes]
rs1339494	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1339495	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1545762	0.88[AFR][1000 genomes]
rs1824847	0.90[AFR][1000 genomes]
rs1964542	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1975957	0.91[AFR][1000 genomes]
rs2027349	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2169895	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2319280	0.84[EUR][1000 genomes]
rs28366567	0.83[EUR][1000 genomes]
rs28443768	0.84[EUR][1000 genomes]
rs28560140	0.85[EUR][1000 genomes]
rs28660389	0.86[EUR][1000 genomes]
rs28753817	0.85[EUR][1000 genomes]
rs3850838	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs4058847	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4926407	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4926408	0.90[AFR][1000 genomes]
rs4926409	0.90[AFR][1000 genomes]
rs55633125	0.85[EUR][1000 genomes]
rs55647342	0.84[EUR][1000 genomes]
rs55840906	0.83[EUR][1000 genomes]
rs55918911	0.86[EUR][1000 genomes]
rs56125600	0.86[EUR][1000 genomes]
rs6657062	0.88[AFR][1000 genomes]
rs6666959	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6687454	0.83[EUR][1000 genomes]
rs6694729	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72692857	0.83[EUR][1000 genomes]
rs72692861	0.84[EUR][1000 genomes]
rs72692862	0.83[EUR][1000 genomes]
rs72692865	0.85[EUR][1000 genomes]
rs72692866	0.85[EUR][1000 genomes]
rs72692869	0.85[EUR][1000 genomes]
rs7519918	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7520930	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7530922	0.82[EUR][1000 genomes]
rs7540847	0.83[EUR][1000 genomes]
rs7550323	0.83[EUR][1000 genomes]
rs7550350	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7553622	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7554367	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7555080	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9662055	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831537	chr1:149833357-150064655	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	431 gene(s)	inside rSNPs	diseases
2	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
3	nsv947321	chr1:150007387-150030042	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:149985600-150022000	Weak transcription	Brain Substantia Nigra	brain
2	chr1:149996600-150037000	Weak transcription	Left Ventricle	heart
3	chr1:150003800-150022400	Weak transcription	Fetal Intestine Small	intestine
4	chr1:150006600-150022400	Weak transcription	Brain Hippocampus Middle	brain

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