Variant report

Variant	rs12061856
Chromosome Location	chr1:150001899-150001900
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:150001605..150003568-chr1:150005160..150008934,3	K562	blood:
2	chr1:149993032..149997672-chr1:150001811..150004898,5	K562	blood:
3	chr1:149996021..149997828-chr1:150000191..150002911,2	K562	blood:
4	chr1:149982534..149985249-chr1:150000444..150003227,2	MCF-7	breast:
5	chr1:149982099..149984155-chr1:150000298..150002375,2	K562	blood:
6	chr1:150000977..150003866-chr1:150038010..150039668,2	MCF-7	breast:
7	chr1:149909776..149912433-chr1:150001738..150003437,2	MCF-7	breast:
8	chr1:149970241..149972986-chr1:150000025..150002958,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-VPS45-6	chr1:150001446-150003978	NONHSAT006264

No data

Variant related genes	Relation type
ENSG00000163113	Chromatin interaction
ENSG00000136631	Chromatin interaction

Extended variants
information (count: 222 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:221)

rs_ID	r²[population]
rs10494261	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10494264	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10494363	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10749674	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10888568	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10888569	0.96[EUR][1000 genomes]
rs10888572	0.81[EUR][1000 genomes]
rs1105209	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11205307	1.00[ASN][1000 genomes]
rs11205308	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11205316	0.92[EUR][1000 genomes]
rs11205317	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11205319	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11205321	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.97[TSI][hapmap];0.91[YRI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11205326	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11205329	0.82[EUR][1000 genomes]
rs11205331	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11205333	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11576997	1.00[ASN][1000 genomes]
rs11577346	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11580307	1.00[ASN][1000 genomes]
rs11583720	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11584091	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11584354	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11584606	1.00[ASN][1000 genomes]
rs11585955	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11587963	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11588837	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11589585	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11589801	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11589922	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11591200	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12058090	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12058502	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12060027	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12060211	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12060830	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12061167	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12061196	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12061565	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12062861	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12063059	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12063281	1.00[CEU][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12063329	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12064532	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12065681	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12066132	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12066293	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12067422	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.97[TSI][hapmap];0.86[YRI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12073359	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12074281	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12077623	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12078573	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12081082	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12086155	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12087578	1.00[ASN][1000 genomes]
rs12093499	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12098106	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12124898	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[MEX][hapmap];0.84[TSI][hapmap];1.00[ASN][1000 genomes]
rs12138231	1.00[ASN][1000 genomes]
rs1339494	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1339495	1.00[CEU][hapmap];1.00[CHB][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1382573	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1545762	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16833149	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16835254	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16836630	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17581380	1.00[CHB][hapmap]
rs17643644	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1804775	1.00[ASN][1000 genomes]
rs1824849	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1824850	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1964542	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1975957	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2027349	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2039800	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2044891	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2169895	0.91[EUR][1000 genomes]
rs2198194	1.00[ASN][1000 genomes]
rs2279171	1.00[CHB][hapmap]
rs2318763	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2319280	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28366567	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28443768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28560140	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28660389	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28753817	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3118119	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs3208509	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35230744	1.00[ASN][1000 genomes]
rs3850838	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3925724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4058847	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41264630	1.00[ASN][1000 genomes]
rs41265185	1.00[ASN][1000 genomes]
rs41302101	1.00[ASN][1000 genomes]
rs45548131	1.00[ASN][1000 genomes]
rs4926388	0.84[EUR][1000 genomes]
rs4926406	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs4926407	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4926408	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4926409	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs4926411	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4926412	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs55633125	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55647342	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55705001	1.00[ASN][1000 genomes]
rs55802315	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55840680	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55840906	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55909733	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55918911	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55963510	1.00[ASN][1000 genomes]
rs56125600	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56188926	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56212907	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56265028	1.00[ASN][1000 genomes]
rs56305459	1.00[ASN][1000 genomes]
rs56349882	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56369603	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56892994	1.00[ASN][1000 genomes]
rs57926929	0.89[EUR][1000 genomes]
rs58395667	1.00[ASN][1000 genomes]
rs58426216	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59054339	1.00[ASN][1000 genomes]
rs59607464	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6657062	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66649150	1.00[ASN][1000 genomes]
rs6666959	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6687454	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6694729	0.88[EUR][1000 genomes]
rs67450539	1.00[ASN][1000 genomes]
rs67880399	1.00[ASN][1000 genomes]
rs68144650	1.00[ASN][1000 genomes]
rs72692803	1.00[ASN][1000 genomes]
rs72692804	1.00[ASN][1000 genomes]
rs72692805	1.00[ASN][1000 genomes]
rs72692807	1.00[ASN][1000 genomes]
rs72692808	1.00[ASN][1000 genomes]
rs72692810	1.00[ASN][1000 genomes]
rs72692811	1.00[ASN][1000 genomes]
rs72692812	1.00[ASN][1000 genomes]
rs72692813	1.00[ASN][1000 genomes]
rs72692814	1.00[ASN][1000 genomes]
rs72692816	1.00[ASN][1000 genomes]
rs72692818	1.00[ASN][1000 genomes]
rs72692819	1.00[ASN][1000 genomes]
rs72692834	1.00[ASN][1000 genomes]
rs72692835	1.00[ASN][1000 genomes]
rs72692837	1.00[ASN][1000 genomes]
rs72692840	1.00[ASN][1000 genomes]
rs72692842	1.00[ASN][1000 genomes]
rs72692843	1.00[ASN][1000 genomes]
rs72692849	1.00[ASN][1000 genomes]
rs72692851	1.00[ASN][1000 genomes]
rs72692854	1.00[ASN][1000 genomes]
rs72692857	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692861	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692862	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692865	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692866	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692869	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692886	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692893	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692895	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692896	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692897	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692898	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692899	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692900	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692901	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694905	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694906	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694908	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694914	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694915	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694917	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694918	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694919	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694923	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694926	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694927	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694928	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694933	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694936	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694942	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694943	0.89[EUR][1000 genomes]
rs72694944	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694945	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694946	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694950	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694951	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694953	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694954	0.86[EUR][1000 genomes]
rs72694956	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694957	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694959	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694960	1.00[ASN][1000 genomes]
rs72694961	1.00[ASN][1000 genomes]
rs72694962	1.00[ASN][1000 genomes]
rs72694964	1.00[ASN][1000 genomes]
rs72694965	1.00[ASN][1000 genomes]
rs72694969	1.00[ASN][1000 genomes]
rs72694974	1.00[ASN][1000 genomes]
rs72694990	1.00[ASN][1000 genomes]
rs72708162	1.00[ASN][1000 genomes]
rs73008195	1.00[ASN][1000 genomes]
rs7519918	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7520930	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7521768	0.95[CEU][hapmap];1.00[CHB][hapmap];0.87[TSI][hapmap];1.00[ASN][1000 genomes]
rs7521783	0.95[CEU][hapmap];1.00[CHB][hapmap];0.87[TSI][hapmap];1.00[ASN][1000 genomes]
rs7530922	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.97[TSI][hapmap];0.91[YRI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7532876	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7540847	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7544531	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7550323	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[YRI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7550350	1.00[CHB][hapmap];0.99[EUR][1000 genomes]
rs7553622	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7554367	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7555080	0.90[EUR][1000 genomes]
rs9662055	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831537	chr1:149833357-150064655	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	431 gene(s)	inside rSNPs	diseases

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs12061856	C1orf54	cis	lymphoblastoid	seeQTL
rs12061856	POLR3GL	cis	cerebellum	SCAN
rs12061856	CTSK	cis	cerebellum	SCAN
rs12061856	PLEKHO1	cis	cerebellum	SCAN
rs12061856	LIX1L	cis	cerebellum	SCAN
rs12061856	LENG1	trans	brain	seeQTL
rs12061856	CTSS	cis	cerebellum	SCAN
rs12061856	SCNM1	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:149985600-150022000	Weak transcription	Brain Substantia Nigra	brain
2	chr1:149993800-150005400	Weak transcription	Fetal Heart	heart
3	chr1:149996600-150037000	Weak transcription	Left Ventricle	heart
4	chr1:150001800-150002600	Weak transcription	Stomach Mucosa	stomach

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