Variant report

Variant	rs3208509
Chromosome Location	chr1:150129335-150129336
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:20)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:20 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:150128930-150130796	GM12878	blood:	n/a	n/a
2	POLR2A	chr1:150128868-150136928	GM12892	blood:	n/a	n/a
3	POLR2A	chr1:150129151-150129396	GM12891	blood:	n/a	n/a
4	POLR2A	chr1:150128882-150136742	GM12892	blood:	n/a	n/a
5	POLR2A	chr1:150129073-150129620	HL-60	blood:	n/a	n/a
6	POLR2A	chr1:150128826-150138689	GM12892	blood:	n/a	n/a
7	POLR2A	chr1:150125817-150129637	GM12891	blood:	n/a	n/a
8	POLR2A	chr1:150129057-150129709	GM12892	blood:	n/a	n/a
9	GATA3	chr1:150129325-150129965	SK-N-SH	brain:	n/a	n/a
10	POLR2A	chr1:150128958-150129821	GM12891	blood:	n/a	n/a
11	POLR2A	chr1:150122674-150136351	U87	brain:	n/a	n/a
12	POLR2A	chr1:150129022-150136498	GM12891	blood:	n/a	n/a
13	POLR2A	chr1:150128921-150130738	H1-neurons	neurons:	n/a	n/a
14	POLR2A	chr1:150128994-150129829	GM12891	blood:	n/a	n/a
15	POLR2A	chr1:150128878-150136929	GM12878	blood:	n/a	n/a
16	MAX	chr1:150129329-150129884	SK-N-SH	brain:	n/a	n/a
17	POLR2A	chr1:150124720-150136281	U87	brain:	n/a	n/a
18	POLR2A	chr1:150129083-150129342	GM12878	blood:	n/a	n/a
19	POLR2A	chr1:150129090-150129356	GM12878	blood:	n/a	n/a
20	GATA3	chr1:150129270-150130145	SK-N-SH	brain:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:149855855..149861458-chr1:150123805..150130441,8	MCF-7	breast:
2	chr1:149856264..149860038-chr1:150127256..150130373,4	MCF-7	breast:
3	chr1:149859201..149861680-chr1:150128397..150130101,2	K562	blood:
4	chr1:149980635..149983433-chr1:150127638..150130379,2	K562	blood:
5	chr1:149820219..149821721-chr1:150128659..150130296,2	MCF-7	breast:

No data

Variant related genes	Relation type
PLEKHO1	TF binding region
ENSG00000178096	Chromatin interaction
ENSG00000261716	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000184260	Chromatin interaction
ENSG00000163113	Chromatin interaction
ENSG00000184270	Chromatin interaction

Extended variants
information (count: 257 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:255)

rs_ID	r²[population]
rs10494261	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10494264	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10494363	1.00[ASN][1000 genomes]
rs1050818	1.00[CHB][hapmap]
rs10749674	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10888568	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10888569	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10888572	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1105209	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11205307	1.00[ASN][1000 genomes]
rs11205308	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11205317	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11205319	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11205321	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11205326	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11205329	0.89[EUR][1000 genomes]
rs11205331	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11205333	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11205337	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11205361	1.00[ASN][1000 genomes]
rs11205362	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11548267	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11576289	1.00[ASN][1000 genomes]
rs11576293	1.00[ASN][1000 genomes]
rs11576997	1.00[ASN][1000 genomes]
rs11577346	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11578585	1.00[ASN][1000 genomes]
rs11579341	1.00[ASN][1000 genomes]
rs11580234	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11580307	1.00[ASN][1000 genomes]
rs11582835	1.00[ASN][1000 genomes]
rs11583720	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11584070	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11584091	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11584354	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11584606	1.00[ASN][1000 genomes]
rs11584761	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11585955	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11587606	1.00[ASN][1000 genomes]
rs11587682	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11587837	1.00[ASN][1000 genomes]
rs11587963	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11588837	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11589585	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11589801	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11589922	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11591200	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[TSI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12058090	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12058502	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12060027	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12060211	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12060830	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12061167	0.84[EUR][1000 genomes]
rs12061196	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12061565	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12061856	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12062861	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12063059	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12063281	1.00[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12063329	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12065681	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12066132	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12066293	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12067422	1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12073359	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12074281	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12077623	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12078573	1.00[ASN][1000 genomes]
rs12081082	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12086155	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12087578	1.00[ASN][1000 genomes]
rs12093499	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12098106	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12120683	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12120867	1.00[ASN][1000 genomes]
rs12123044	1.00[ASN][1000 genomes]
rs12124898	0.95[CEU][hapmap];1.00[CHB][hapmap];0.87[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12126958	1.00[CHB][hapmap]
rs12128385	1.00[ASN][1000 genomes]
rs12138231	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12138787	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12139248	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12139286	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12142178	1.00[ASN][1000 genomes]
rs12142331	1.00[ASN][1000 genomes]
rs12145630	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1339494	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1339495	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1382573	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1545762	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16833149	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16835254	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16835780	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16836143	1.00[CHB][hapmap]
rs16836630	1.00[ASN][1000 genomes]
rs17643644	1.00[ASN][1000 genomes]
rs1804775	1.00[ASN][1000 genomes]
rs1824848	0.93[EUR][1000 genomes]
rs1824849	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1824850	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1964542	0.86[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1975957	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2027349	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2039800	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2044891	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2133128	1.00[ASN][1000 genomes]
rs2169895	0.82[EUR][1000 genomes]
rs2198194	1.00[ASN][1000 genomes]
rs2279171	1.00[CHB][hapmap]
rs2318763	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2319280	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28366567	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28443768	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28560019	1.00[ASN][1000 genomes]
rs28560140	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28660389	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28753817	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3118119	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34755378	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs35230744	1.00[ASN][1000 genomes]
rs3850838	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3850841	1.00[CHB][hapmap]
rs3925724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4058847	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.84[YRI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41265185	1.00[ASN][1000 genomes]
rs41300865	1.00[ASN][1000 genomes]
rs41302101	1.00[ASN][1000 genomes]
rs45548131	1.00[ASN][1000 genomes]
rs4926391	0.93[EUR][1000 genomes]
rs4926406	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.81[EUR][1000 genomes]
rs4926407	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4926408	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4926409	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4926411	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4926412	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55633125	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55647342	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55705001	1.00[ASN][1000 genomes]
rs55802315	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55840680	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55840906	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55909733	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55918911	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55963510	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55973252	1.00[ASN][1000 genomes]
rs56125600	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56133109	1.00[ASN][1000 genomes]
rs56188926	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56212907	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56305459	1.00[ASN][1000 genomes]
rs56349882	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56369603	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56892994	1.00[ASN][1000 genomes]
rs57926929	0.89[EUR][1000 genomes]
rs58395667	1.00[ASN][1000 genomes]
rs58426216	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59054339	1.00[ASN][1000 genomes]
rs59607464	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6657062	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66649150	1.00[ASN][1000 genomes]
rs6666959	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6687454	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6694729	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs67450539	1.00[ASN][1000 genomes]
rs67880399	1.00[ASN][1000 genomes]
rs72692810	1.00[ASN][1000 genomes]
rs72692811	1.00[ASN][1000 genomes]
rs72692812	1.00[ASN][1000 genomes]
rs72692813	1.00[ASN][1000 genomes]
rs72692814	1.00[ASN][1000 genomes]
rs72692816	1.00[ASN][1000 genomes]
rs72692818	1.00[ASN][1000 genomes]
rs72692819	1.00[ASN][1000 genomes]
rs72692834	1.00[ASN][1000 genomes]
rs72692835	1.00[ASN][1000 genomes]
rs72692837	1.00[ASN][1000 genomes]
rs72692840	1.00[ASN][1000 genomes]
rs72692842	1.00[ASN][1000 genomes]
rs72692843	1.00[ASN][1000 genomes]
rs72692849	1.00[ASN][1000 genomes]
rs72692851	1.00[ASN][1000 genomes]
rs72692854	1.00[ASN][1000 genomes]
rs72692857	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692861	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692862	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692865	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692866	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692869	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692886	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692893	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692895	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692896	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692897	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692898	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692899	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692900	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692901	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694905	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694906	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694908	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694914	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694915	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694917	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694918	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694919	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694923	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694926	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694927	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694928	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694933	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694936	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694942	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694943	0.92[EUR][1000 genomes]
rs72694944	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694945	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694946	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694950	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694951	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694953	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694954	0.95[EUR][1000 genomes]
rs72694956	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694957	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694959	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694960	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694961	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694962	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694964	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694965	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694969	1.00[ASN][1000 genomes]
rs72694974	1.00[ASN][1000 genomes]
rs72694990	1.00[ASN][1000 genomes]
rs72694993	1.00[ASN][1000 genomes]
rs72696807	1.00[ASN][1000 genomes]
rs72696808	1.00[ASN][1000 genomes]
rs72696824	1.00[ASN][1000 genomes]
rs72696828	1.00[ASN][1000 genomes]
rs72696841	1.00[ASN][1000 genomes]
rs72696848	1.00[ASN][1000 genomes]
rs73008195	1.00[ASN][1000 genomes]
rs7519918	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7520930	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.84[YRI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7521768	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[TSI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7521783	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[TSI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7530922	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7532876	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7540847	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7544145	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7544531	1.00[ASN][1000 genomes]
rs7550323	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7550350	1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7553622	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7554367	0.86[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7555080	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs942453	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9662055	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv535152	chr1:150120726-150143089	Active TSS Strong transcription Genic enhancers Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs3208509	POLR3GL	cis	cerebellum	SCAN
rs3208509	PLEKHO1	cis	cerebellum	SCAN
rs3208509	CTSK	cis	cerebellum	SCAN
rs3208509	CTSS	cis	cerebellum	SCAN
rs3208509	LIX1L	cis	cerebellum	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150123200-150135400	Weak transcription	A549	lung
2	chr1:150123400-150134400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:150123400-150134400	Weak transcription	NHEK	skin
4	chr1:150123800-150131200	Weak transcription	Pancreas	Pancrea
5	chr1:150123800-150134200	Weak transcription	HMEC	breast
6	chr1:150123800-150134600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr1:150124200-150131000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:150124400-150132000	Genic enhancers	Primary B cells from peripheral blood	blood
9	chr1:150124400-150133400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr1:150124600-150130800	Strong transcription	Fetal Muscle Trunk	muscle
11	chr1:150124600-150133000	Strong transcription	H9 Cell Line	embryonic stem cell
12	chr1:150124600-150133200	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr1:150124600-150133200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr1:150124800-150132400	Strong transcription	Fetal Intestine Large	intestine
15	chr1:150124800-150133200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
16	chr1:150125000-150132000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr1:150125200-150131800	Genic enhancers	Primary B cells from cord blood	blood
18	chr1:150125200-150132400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
19	chr1:150125200-150132800	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr1:150125200-150132800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr1:150125200-150133000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr1:150125200-150133600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr1:150125400-150129600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr1:150125400-150131200	Strong transcription	HepG2	liver
25	chr1:150125400-150131400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr1:150125400-150131600	Strong transcription	Fetal Intestine Small	intestine
27	chr1:150125400-150133000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr1:150125400-150133200	Genic enhancers	HSMM	muscle
29	chr1:150125400-150133600	Genic enhancers	NH-A	brain
30	chr1:150125600-150129400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr1:150125600-150132200	Genic enhancers	HUVEC	blood vessel
32	chr1:150125600-150132400	Strong transcription	H1 Cell Line	embryonic stem cell
33	chr1:150125600-150132400	Strong transcription	HUES6 Cell Line	embryonic stem cell
34	chr1:150125600-150132800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr1:150125600-150133200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr1:150125800-150130200	Strong transcription	Thymus	Thymus
37	chr1:150125800-150130400	Strong transcription	Fetal Lung	lung
38	chr1:150125800-150131000	Genic enhancers	Primary monocytes fromperipheralblood	blood
39	chr1:150125800-150131800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr1:150125800-150132000	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr1:150126200-150130200	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr1:150126200-150132000	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr1:150126200-150132400	Strong transcription	Aorta	Aorta
44	chr1:150126200-150132600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr1:150126400-150130200	Strong transcription	Primary hematopoietic stem cells	blood
46	chr1:150126400-150132200	Strong transcription	Skeletal Muscle Male	skeletal muscle
47	chr1:150126400-150133000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr1:150126600-150130600	Strong transcription	Fetal Kidney	kidney
49	chr1:150126600-150130600	Strong transcription	HSMMtube	muscle
50	chr1:150126600-150132600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links