Variant report

Variant	rs11205329
Chromosome Location	chr1:150097692-150097693
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 146 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:145)

rs_ID	r²[population]
rs10494264	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10749674	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10888568	0.84[EUR][1000 genomes]
rs10888569	0.87[EUR][1000 genomes]
rs10888572	0.87[EUR][1000 genomes]
rs11205317	0.83[EUR][1000 genomes]
rs11205319	0.83[EUR][1000 genomes]
rs11205321	0.85[EUR][1000 genomes]
rs11205326	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11205331	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11205333	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11205337	0.80[EUR][1000 genomes]
rs11577346	0.89[EUR][1000 genomes]
rs11583720	0.91[EUR][1000 genomes]
rs11584091	0.92[EUR][1000 genomes]
rs11584354	0.88[EUR][1000 genomes]
rs11585955	0.91[EUR][1000 genomes]
rs11587963	0.92[EUR][1000 genomes]
rs11589585	0.83[EUR][1000 genomes]
rs11589801	0.82[EUR][1000 genomes]
rs11589922	0.89[EUR][1000 genomes]
rs11591200	0.87[EUR][1000 genomes]
rs12058090	0.83[EUR][1000 genomes]
rs12058502	0.82[EUR][1000 genomes]
rs12060027	0.84[EUR][1000 genomes]
rs12060211	0.83[EUR][1000 genomes]
rs12061167	0.83[EUR][1000 genomes]
rs12061196	0.83[EUR][1000 genomes]
rs12061565	0.82[EUR][1000 genomes]
rs12061856	0.82[EUR][1000 genomes]
rs12062861	0.82[EUR][1000 genomes]
rs12063059	0.83[EUR][1000 genomes]
rs12063281	0.82[EUR][1000 genomes]
rs12063329	0.82[EUR][1000 genomes]
rs12065681	0.83[EUR][1000 genomes]
rs12066132	0.83[EUR][1000 genomes]
rs12066293	0.83[EUR][1000 genomes]
rs12067422	0.83[EUR][1000 genomes]
rs12073359	0.82[EUR][1000 genomes]
rs12074281	0.85[EUR][1000 genomes]
rs12093499	0.82[EUR][1000 genomes]
rs12098106	0.82[EUR][1000 genomes]
rs12138231	0.87[EUR][1000 genomes]
rs12139248	0.85[EUR][1000 genomes]
rs1339494	0.83[EUR][1000 genomes]
rs1339495	0.83[EUR][1000 genomes]
rs1382573	0.87[EUR][1000 genomes]
rs1545762	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1824848	0.83[EUR][1000 genomes]
rs1824849	0.87[EUR][1000 genomes]
rs1824850	0.87[EUR][1000 genomes]
rs1964542	0.87[EUR][1000 genomes]
rs1975957	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2027349	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2039800	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2169895	0.83[EUR][1000 genomes]
rs2318763	0.93[EUR][1000 genomes]
rs2319280	0.82[EUR][1000 genomes]
rs28366567	0.81[EUR][1000 genomes]
rs28443768	0.82[EUR][1000 genomes]
rs28560140	0.83[EUR][1000 genomes]
rs28660389	0.84[EUR][1000 genomes]
rs28753817	0.83[EUR][1000 genomes]
rs3208509	0.89[EUR][1000 genomes]
rs3850838	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3925724	0.94[EUR][1000 genomes]
rs4058847	0.80[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4926391	0.83[EUR][1000 genomes]
rs4926406	0.82[EUR][1000 genomes]
rs4926407	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4926408	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4926409	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4926411	0.83[EUR][1000 genomes]
rs4926412	0.83[EUR][1000 genomes]
rs55633125	0.83[EUR][1000 genomes]
rs55647342	0.86[EUR][1000 genomes]
rs55802315	0.83[EUR][1000 genomes]
rs55840680	0.92[EUR][1000 genomes]
rs55840906	0.82[EUR][1000 genomes]
rs55909733	0.92[EUR][1000 genomes]
rs55918911	0.84[EUR][1000 genomes]
rs56125600	0.84[EUR][1000 genomes]
rs56188926	0.92[EUR][1000 genomes]
rs56212907	0.90[EUR][1000 genomes]
rs56349882	0.89[EUR][1000 genomes]
rs56369603	0.92[EUR][1000 genomes]
rs57926929	0.88[EUR][1000 genomes]
rs58426216	0.92[EUR][1000 genomes]
rs59607464	0.89[EUR][1000 genomes]
rs6657062	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6666959	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6687454	0.82[EUR][1000 genomes]
rs6694729	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72692857	0.82[EUR][1000 genomes]
rs72692861	0.82[EUR][1000 genomes]
rs72692862	0.82[EUR][1000 genomes]
rs72692865	0.83[EUR][1000 genomes]
rs72692866	0.83[EUR][1000 genomes]
rs72692869	0.83[EUR][1000 genomes]
rs72692886	0.88[EUR][1000 genomes]
rs72692893	0.90[EUR][1000 genomes]
rs72692895	0.91[EUR][1000 genomes]
rs72692896	0.91[EUR][1000 genomes]
rs72692897	0.91[EUR][1000 genomes]
rs72692898	0.90[EUR][1000 genomes]
rs72692899	0.90[EUR][1000 genomes]
rs72692900	0.90[EUR][1000 genomes]
rs72692901	0.91[EUR][1000 genomes]
rs72694905	0.90[EUR][1000 genomes]
rs72694906	0.92[EUR][1000 genomes]
rs72694908	0.92[EUR][1000 genomes]
rs72694914	0.91[EUR][1000 genomes]
rs72694915	0.91[EUR][1000 genomes]
rs72694917	0.92[EUR][1000 genomes]
rs72694918	0.92[EUR][1000 genomes]
rs72694919	0.92[EUR][1000 genomes]
rs72694923	0.91[EUR][1000 genomes]
rs72694926	0.92[EUR][1000 genomes]
rs72694927	0.93[EUR][1000 genomes]
rs72694928	0.92[EUR][1000 genomes]
rs72694933	0.92[EUR][1000 genomes]
rs72694936	0.92[EUR][1000 genomes]
rs72694942	0.92[EUR][1000 genomes]
rs72694943	0.93[EUR][1000 genomes]
rs72694944	0.92[EUR][1000 genomes]
rs72694945	0.92[EUR][1000 genomes]
rs72694946	0.92[EUR][1000 genomes]
rs72694950	0.93[EUR][1000 genomes]
rs72694951	0.92[EUR][1000 genomes]
rs72694953	0.92[EUR][1000 genomes]
rs72694954	0.91[EUR][1000 genomes]
rs72694956	0.87[EUR][1000 genomes]
rs72694957	0.87[EUR][1000 genomes]
rs72694959	0.83[EUR][1000 genomes]
rs7519918	0.83[EUR][1000 genomes]
rs7520930	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7521768	0.81[EUR][1000 genomes]
rs7521783	0.81[EUR][1000 genomes]
rs7530922	0.83[EUR][1000 genomes]
rs7540847	0.85[EUR][1000 genomes]
rs7550323	0.85[EUR][1000 genomes]
rs7550350	0.83[EUR][1000 genomes]
rs7553622	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7555080	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9662055	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150040400-150121400	Weak transcription	Pancreas	Pancrea
2	chr1:150041000-150114400	Weak transcription	Right Ventricle	heart
3	chr1:150052000-150116800	Weak transcription	Spleen	Spleen
4	chr1:150055000-150100600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:150055000-150120800	Weak transcription	Aorta	Aorta
6	chr1:150055200-150104800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr1:150061000-150116800	Weak transcription	Ovary	ovary
8	chr1:150067000-150113200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr1:150067200-150101200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:150067400-150121200	Weak transcription	Colonic Mucosa	Colon
11	chr1:150069000-150113800	Weak transcription	Fetal Kidney	kidney
12	chr1:150069000-150121000	Weak transcription	NHLF	lung
13	chr1:150071000-150121000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr1:150071200-150120600	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr1:150072400-150121000	Weak transcription	Brain Angular Gyrus	brain
16	chr1:150077200-150113000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr1:150077400-150112800	Weak transcription	Fetal Heart	heart
18	chr1:150079200-150121000	Weak transcription	Thymus	Thymus
19	chr1:150083200-150116400	Weak transcription	Primary hematopoietic stem cells	blood
20	chr1:150083600-150120800	Weak transcription	Brain Hippocampus Middle	brain
21	chr1:150084000-150110600	Weak transcription	Stomach Smooth Muscle	stomach
22	chr1:150085000-150100800	Weak transcription	Lung	lung
23	chr1:150085400-150116400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr1:150085400-150119000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr1:150085400-150120800	Weak transcription	NH-A	brain
26	chr1:150085400-150121200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr1:150085400-150121200	Weak transcription	Psoas Muscle	Psoas
28	chr1:150085600-150099200	Weak transcription	HSMM	muscle
29	chr1:150085600-150121200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr1:150085800-150121000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr1:150086800-150116400	Weak transcription	Left Ventricle	heart
32	chr1:150087000-150107600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr1:150087000-150116400	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr1:150087000-150118400	Weak transcription	Fetal Intestine Large	intestine
35	chr1:150087000-150121200	Weak transcription	Esophagus	oesophagus
36	chr1:150087000-150121200	Weak transcription	Placenta	Placenta
37	chr1:150087200-150099000	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr1:150087200-150107400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr1:150087400-150116800	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr1:150087800-150098800	Weak transcription	Fetal Lung	lung
41	chr1:150087800-150099600	Weak transcription	Primary B cells from cord blood	blood
42	chr1:150087800-150102400	Weak transcription	Adipose Nuclei	Adipose
43	chr1:150087800-150110200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr1:150087800-150113800	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr1:150087800-150118600	Weak transcription	Dnd41	blood
46	chr1:150087800-150120800	Weak transcription	Brain Anterior Caudate	brain
47	chr1:150087800-150121000	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr1:150088000-150099000	Weak transcription	Fetal Brain Female	brain
49	chr1:150088000-150099400	Weak transcription	Fetal Muscle Leg	muscle
50	chr1:150088000-150111400	Weak transcription	GM12878-XiMat	blood

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