The 2.0 version of rSNPBase

Variant report

Variant rs11577346
Chromosome Location chr1:150066530-150066531
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:121 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:150040200-150090800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr1:150040400-150078800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr1:150040400-150082800 Weak transcription Small Intestine intestine
4 chr1:150040400-150086800 Weak transcription Esophagus oesophagus
5 chr1:150040400-150121400 Weak transcription Pancreas Pancrea
6 chr1:150040600-150072200 Weak transcription ES-WA7 Cell Line embryonic stem cell
7 chr1:150040600-150092000 Weak transcription ES-I3 Cell Line embryonic stem cell
8 chr1:150041000-150114400 Weak transcription Right Ventricle heart
9 chr1:150041400-150067800 Weak transcription H9 Cell Line embryonic stem cell
10 chr1:150041400-150069200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr1:150042200-150073400 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
12 chr1:150042200-150086600 Weak transcription Gastric stomach
13 chr1:150042400-150067600 Weak transcription Psoas Muscle Psoas
14 chr1:150042600-150090800 Weak transcription Stomach Mucosa stomach
15 chr1:150048400-150068400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
16 chr1:150050600-150067200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
17 chr1:150050600-150084800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
18 chr1:150052000-150071400 Weak transcription Fetal Intestine Small intestine
19 chr1:150052000-150116800 Weak transcription Spleen Spleen
20 chr1:150055000-150086200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
21 chr1:150055000-150100600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
22 chr1:150055000-150120800 Weak transcription Aorta Aorta
23 chr1:150055200-150069600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
24 chr1:150055200-150078400 Weak transcription Thymus Thymus
25 chr1:150055200-150096000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
26 chr1:150055200-150104800 Weak transcription Brain Cingulate Gyrus brain
27 chr1:150055400-150067200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
28 chr1:150055600-150076400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
29 chr1:150056000-150072200 Weak transcription Primary hematopoietic stem cells short term culture blood
30 chr1:150056200-150074200 Weak transcription Lung lung
31 chr1:150056200-150081800 Weak transcription Brain Substantia Nigra brain
32 chr1:150056600-150073400 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
33 chr1:150056600-150086400 Weak transcription H1 Cell Line embryonic stem cell
34 chr1:150056800-150073400 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
35 chr1:150057000-150068000 Weak transcription K562 blood
36 chr1:150057000-150084800 Weak transcription A549 lung
37 chr1:150059200-150068400 Strong transcription Rectal Mucosa Donor 29 rectum
38 chr1:150060000-150096000 Weak transcription Placenta Amnion Placenta Amnion
39 chr1:150061000-150066600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
40 chr1:150061000-150070000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
41 chr1:150061000-150070000 Weak transcription Fetal Stomach stomach
42 chr1:150061000-150116800 Weak transcription Ovary ovary
43 chr1:150061800-150084800 Weak transcription Left Ventricle heart
44 chr1:150062200-150068800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
45 chr1:150062200-150069200 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
46 chr1:150062200-150071400 Strong transcription Breast Myoepithelial Primary Cells Breast
47 chr1:150062800-150072800 Strong transcription Adipose Nuclei Adipose
48 chr1:150063000-150069200 Strong transcription HUES48 Cell Line embryonic stem cell
49 chr1:150063000-150073000 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
50 chr1:150063200-150067800 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015