Variant report

Variant	rs1382573
Chromosome Location	chr1:150132324-150132325
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:150059899..150062299-chr1:150132296..150134996,2	K562	blood:
2	chr1:149854392..149861957-chr1:150131544..150142194,21	K562	blood:
3	chr1:150131401..150134100-chr2:110369407..110372211,2	MCF-7	breast:
4	chr1:150053878..150056671-chr1:150132112..150134683,2	MCF-7	breast:
5	chr1:150035483..150047454-chr1:150129931..150138567,28	MCF-7	breast:
6	chr1:149854077..149861961-chr1:150131511..150145996,30	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178096	Chromatin interaction
ENSG00000184270	Chromatin interaction
ENSG00000198142	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000186522	Chromatin interaction
ENSG00000136631	Chromatin interaction
ENSG00000184260	Chromatin interaction

Extended variants
information (count: 252 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:250)

rs_ID	r²[population]
rs10494261	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10494264	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10494363	1.00[ASN][1000 genomes]
rs1050818	1.00[CHB][hapmap]
rs10749674	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10888568	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10888569	0.85[EUR][1000 genomes]
rs10888572	0.86[EUR][1000 genomes]
rs1105209	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11205307	1.00[ASN][1000 genomes]
rs11205308	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11205317	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11205319	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11205321	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11205326	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11205329	0.87[EUR][1000 genomes]
rs11205331	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11205333	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11205337	0.89[EUR][1000 genomes]
rs11205361	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11205362	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11548267	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11576289	1.00[ASN][1000 genomes]
rs11576293	1.00[ASN][1000 genomes]
rs11576997	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11577346	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11578585	1.00[ASN][1000 genomes]
rs11579341	1.00[ASN][1000 genomes]
rs11580234	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11580307	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11582835	1.00[ASN][1000 genomes]
rs11583720	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11584070	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11584091	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11584354	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11584606	1.00[ASN][1000 genomes]
rs11584761	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11585955	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11587606	1.00[ASN][1000 genomes]
rs11587682	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11587837	1.00[ASN][1000 genomes]
rs11587963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11588837	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11589585	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11589801	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11589922	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11591200	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12058090	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12058502	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12060027	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12060211	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12060830	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12061167	0.85[EUR][1000 genomes]
rs12061196	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12061565	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12061856	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12062861	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12063059	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12063281	1.00[CEU][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12063329	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12064532	0.81[EUR][1000 genomes]
rs12065681	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12066132	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12066293	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12067422	1.00[CEU][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12073359	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12074281	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12077623	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12078573	1.00[ASN][1000 genomes]
rs12081082	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12086155	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12087578	1.00[ASN][1000 genomes]
rs12093499	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12098106	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12120683	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12120867	1.00[ASN][1000 genomes]
rs12123044	1.00[ASN][1000 genomes]
rs12124898	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12126312	1.00[ASN][1000 genomes]
rs12126958	1.00[CHB][hapmap]
rs12128385	1.00[ASN][1000 genomes]
rs12138231	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12138787	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12139248	0.84[EUR][1000 genomes]
rs12139286	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12142178	1.00[ASN][1000 genomes]
rs12142331	1.00[ASN][1000 genomes]
rs12145630	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1339494	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1339495	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1545762	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16833149	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16835254	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16835780	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16836143	1.00[CHB][hapmap]
rs1824848	0.93[EUR][1000 genomes]
rs1824849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1824850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1964542	0.95[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1975957	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2027349	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2039800	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2044891	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2133128	1.00[ASN][1000 genomes]
rs2169895	0.82[EUR][1000 genomes]
rs2198194	1.00[ASN][1000 genomes]
rs2279171	1.00[CHB][hapmap]
rs2318763	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2319280	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28366567	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28443768	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28560019	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28560140	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28660389	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28753817	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3118119	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3208509	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34755378	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35230744	1.00[ASN][1000 genomes]
rs3850838	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3850841	1.00[CHB][hapmap]
rs3925724	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4058847	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41265185	1.00[ASN][1000 genomes]
rs41300865	1.00[ASN][1000 genomes]
rs41302101	1.00[ASN][1000 genomes]
rs4926391	0.93[EUR][1000 genomes]
rs4926406	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs4926407	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4926408	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4926409	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs4926411	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4926412	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55633125	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55647342	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55802315	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55840680	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55840906	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55909733	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55918911	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55963510	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55973252	1.00[ASN][1000 genomes]
rs56125600	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56133109	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56188926	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56212907	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56305459	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56349882	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56369603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56397877	1.00[AFR][1000 genomes]
rs56892994	1.00[ASN][1000 genomes]
rs57926929	0.90[EUR][1000 genomes]
rs58395667	1.00[ASN][1000 genomes]
rs58426216	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59054339	1.00[ASN][1000 genomes]
rs59607464	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6657062	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66649150	1.00[ASN][1000 genomes]
rs6666959	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6687454	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6694729	0.93[EUR][1000 genomes]
rs67450539	1.00[ASN][1000 genomes]
rs67880399	1.00[ASN][1000 genomes]
rs72692816	1.00[ASN][1000 genomes]
rs72692818	1.00[ASN][1000 genomes]
rs72692819	1.00[ASN][1000 genomes]
rs72692834	1.00[ASN][1000 genomes]
rs72692835	1.00[ASN][1000 genomes]
rs72692837	1.00[ASN][1000 genomes]
rs72692840	1.00[ASN][1000 genomes]
rs72692842	1.00[ASN][1000 genomes]
rs72692843	1.00[ASN][1000 genomes]
rs72692849	1.00[ASN][1000 genomes]
rs72692851	1.00[ASN][1000 genomes]
rs72692854	1.00[ASN][1000 genomes]
rs72692857	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692861	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692862	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692865	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692866	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692869	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692873	1.00[AFR][1000 genomes]
rs72692886	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692893	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692895	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692896	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692897	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692898	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692899	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692900	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692901	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694905	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694906	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694908	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694914	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694915	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694917	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694918	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694919	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694923	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694926	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694927	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694928	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694933	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694936	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694942	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694943	0.94[EUR][1000 genomes]
rs72694944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694946	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694950	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694954	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72694956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694957	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694959	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694960	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694961	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694962	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694964	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694965	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694969	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72694972	1.00[AFR][1000 genomes]
rs72694974	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72694990	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72694993	1.00[ASN][1000 genomes]
rs72696807	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72696808	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72696824	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72696828	1.00[ASN][1000 genomes]
rs72696841	1.00[ASN][1000 genomes]
rs72696848	1.00[ASN][1000 genomes]
rs72696852	1.00[ASN][1000 genomes]
rs73008195	1.00[ASN][1000 genomes]
rs7519918	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7520930	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7521768	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7521783	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7530922	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7532876	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7540847	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7544145	0.85[EUR][1000 genomes]
rs7550323	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7550350	1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs7553622	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7554367	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7555080	0.91[EUR][1000 genomes]
rs942453	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9662055	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv535152	chr1:150120726-150143089	Active TSS Strong transcription Genic enhancers Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150123200-150135400	Weak transcription	A549	lung
2	chr1:150123400-150134400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:150123400-150134400	Weak transcription	NHEK	skin
4	chr1:150123800-150134200	Weak transcription	HMEC	breast
5	chr1:150123800-150134600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr1:150124400-150133400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr1:150124600-150133000	Strong transcription	H9 Cell Line	embryonic stem cell
8	chr1:150124600-150133200	Strong transcription	HUES48 Cell Line	embryonic stem cell
9	chr1:150124600-150133200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:150124800-150132400	Strong transcription	Fetal Intestine Large	intestine
11	chr1:150124800-150133200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
12	chr1:150125200-150132400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
13	chr1:150125200-150132800	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr1:150125200-150132800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr1:150125200-150133000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:150125200-150133600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr1:150125400-150133000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr1:150125400-150133200	Genic enhancers	HSMM	muscle
19	chr1:150125400-150133600	Genic enhancers	NH-A	brain
20	chr1:150125600-150132400	Strong transcription	H1 Cell Line	embryonic stem cell
21	chr1:150125600-150132400	Strong transcription	HUES6 Cell Line	embryonic stem cell
22	chr1:150125600-150132800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr1:150125600-150133200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr1:150126200-150132400	Strong transcription	Aorta	Aorta
25	chr1:150126200-150132600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr1:150126400-150133000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr1:150126600-150132600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr1:150126800-150132400	Strong transcription	NHDF-Ad	bronchial
29	chr1:150126800-150132800	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr1:150126800-150133400	Weak transcription	Right Atrium	heart
31	chr1:150127200-150132400	Genic enhancers	Muscle Satellite Cultured Cells	--
32	chr1:150127200-150132800	Strong transcription	Cortex derived primary cultured neurospheres	brain
33	chr1:150127400-150132800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr1:150127400-150132800	Weak transcription	K562	blood
35	chr1:150127400-150133000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr1:150127600-150132400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr1:150127600-150133000	Genic enhancers	Colon Smooth Muscle	Colon
38	chr1:150128000-150133400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr1:150128200-150132400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr1:150128200-150133000	Strong transcription	Fetal Brain Female	brain
41	chr1:150128400-150132400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr1:150128400-150132400	Genic enhancers	Primary T cells from cord blood	blood
43	chr1:150128400-150133600	Weak transcription	Fetal Brain Male	brain
44	chr1:150128600-150132800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr1:150129400-150132400	Genic enhancers	Primary T cells fromperipheralblood	blood
46	chr1:150129600-150133200	Genic enhancers	Fetal Thymus	thymus
47	chr1:150129800-150132600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr1:150129800-150132800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr1:150129800-150132800	Weak transcription	Small Intestine	intestine
50	chr1:150129800-150133400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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