Variant report
Variant | rs72694962 |
---|---|
Chromosome Location | chr1:150147962-150147963 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr1:150146767..150148436-chr1:150150182..150153003,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10494261 | 1.00[ASN][1000 genomes] |
rs10494264 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10749674 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10888568 | 1.00[ASN][1000 genomes] |
rs10888569 | 0.81[EUR][1000 genomes] |
rs1105209 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11205307 | 1.00[ASN][1000 genomes] |
rs11205308 | 1.00[ASN][1000 genomes] |
rs11205317 | 1.00[ASN][1000 genomes] |
rs11205319 | 1.00[ASN][1000 genomes] |
rs11205321 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11205326 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11205331 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11205333 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11205337 | 0.94[EUR][1000 genomes] |
rs11205361 | 1.00[ASN][1000 genomes] |
rs11205362 | 1.00[ASN][1000 genomes] |
rs11548267 | 1.00[ASN][1000 genomes] |
rs11576289 | 1.00[ASN][1000 genomes] |
rs11576293 | 1.00[ASN][1000 genomes] |
rs11576997 | 1.00[ASN][1000 genomes] |
rs11577346 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11578585 | 1.00[ASN][1000 genomes] |
rs11579341 | 1.00[ASN][1000 genomes] |
rs11580234 | 1.00[ASN][1000 genomes] |
rs11580307 | 1.00[ASN][1000 genomes] |
rs11582835 | 1.00[ASN][1000 genomes] |
rs11583720 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11584070 | 1.00[ASN][1000 genomes] |
rs11584091 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11584354 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11584606 | 1.00[ASN][1000 genomes] |
rs11584761 | 1.00[ASN][1000 genomes] |
rs11585955 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11586880 | 1.00[ASN][1000 genomes] |
rs11587606 | 1.00[ASN][1000 genomes] |
rs11587682 | 1.00[ASN][1000 genomes] |
rs11587837 | 1.00[ASN][1000 genomes] |
rs11587963 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11588837 | 1.00[ASN][1000 genomes] |
rs11589585 | 1.00[ASN][1000 genomes] |
rs11589801 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11589922 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11591200 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12058090 | 1.00[ASN][1000 genomes] |
rs12058502 | 1.00[ASN][1000 genomes] |
rs12060027 | 1.00[ASN][1000 genomes] |
rs12060211 | 1.00[ASN][1000 genomes] |
rs12060830 | 1.00[ASN][1000 genomes] |
rs12061196 | 1.00[ASN][1000 genomes] |
rs12061565 | 1.00[ASN][1000 genomes] |
rs12061856 | 1.00[ASN][1000 genomes] |
rs12062861 | 1.00[ASN][1000 genomes] |
rs12063059 | 1.00[ASN][1000 genomes] |
rs12063281 | 1.00[ASN][1000 genomes] |
rs12063329 | 1.00[ASN][1000 genomes] |
rs12065681 | 1.00[ASN][1000 genomes] |
rs12066132 | 1.00[ASN][1000 genomes] |
rs12066293 | 1.00[ASN][1000 genomes] |
rs12067422 | 1.00[ASN][1000 genomes] |
rs12073359 | 1.00[ASN][1000 genomes] |
rs12074281 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12077623 | 1.00[ASN][1000 genomes] |
rs12081082 | 1.00[ASN][1000 genomes] |
rs12086155 | 1.00[ASN][1000 genomes] |
rs12087578 | 1.00[ASN][1000 genomes] |
rs12093499 | 1.00[ASN][1000 genomes] |
rs12098106 | 1.00[ASN][1000 genomes] |
rs12120683 | 1.00[ASN][1000 genomes] |
rs12120867 | 1.00[ASN][1000 genomes] |
rs12123044 | 1.00[ASN][1000 genomes] |
rs12124898 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12126312 | 1.00[ASN][1000 genomes] |
rs12128385 | 1.00[ASN][1000 genomes] |
rs12138231 | 1.00[ASN][1000 genomes] |
rs12138787 | 1.00[ASN][1000 genomes] |
rs12139286 | 1.00[ASN][1000 genomes] |
rs12142178 | 1.00[ASN][1000 genomes] |
rs12142331 | 1.00[ASN][1000 genomes] |
rs12145630 | 1.00[ASN][1000 genomes] |
rs1339494 | 1.00[ASN][1000 genomes] |
rs1339495 | 1.00[ASN][1000 genomes] |
rs1382573 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1545762 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs16833149 | 1.00[ASN][1000 genomes] |
rs16835254 | 1.00[ASN][1000 genomes] |
rs16835780 | 1.00[ASN][1000 genomes] |
rs1824848 | 0.95[EUR][1000 genomes] |
rs1824849 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1824850 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1964542 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1975957 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2027349 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2039800 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2044891 | 1.00[ASN][1000 genomes] |
rs2133128 | 1.00[ASN][1000 genomes] |
rs2198194 | 1.00[ASN][1000 genomes] |
rs2318763 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2319280 | 1.00[ASN][1000 genomes] |
rs28366567 | 1.00[ASN][1000 genomes] |
rs28443768 | 1.00[ASN][1000 genomes] |
rs28560019 | 1.00[ASN][1000 genomes] |
rs28560140 | 1.00[ASN][1000 genomes] |
rs28660389 | 1.00[ASN][1000 genomes] |
rs28753817 | 1.00[ASN][1000 genomes] |
rs3118119 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3208509 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs34755378 | 1.00[ASN][1000 genomes] |
rs35230744 | 1.00[ASN][1000 genomes] |
rs3850838 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3925724 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4058847 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs41265185 | 1.00[ASN][1000 genomes] |
rs41300865 | 1.00[ASN][1000 genomes] |
rs4926391 | 0.95[EUR][1000 genomes] |
rs4926407 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4926408 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4926409 | 0.80[EUR][1000 genomes] |
rs4926411 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4926412 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs55633125 | 1.00[ASN][1000 genomes] |
rs55647342 | 1.00[ASN][1000 genomes] |
rs55802315 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs55840680 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs55840906 | 1.00[ASN][1000 genomes] |
rs55909733 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs55918911 | 1.00[ASN][1000 genomes] |
rs55963510 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs55973252 | 1.00[ASN][1000 genomes] |
rs56125600 | 1.00[ASN][1000 genomes] |
rs56133109 | 1.00[ASN][1000 genomes] |
rs56188926 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs56212907 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs56305459 | 1.00[ASN][1000 genomes] |
rs56349882 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs56369603 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs56892994 | 1.00[ASN][1000 genomes] |
rs57926929 | 0.80[EUR][1000 genomes] |
rs58395667 | 1.00[ASN][1000 genomes] |
rs58426216 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs59054339 | 1.00[ASN][1000 genomes] |
rs59607464 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6657062 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs66649150 | 1.00[ASN][1000 genomes] |
rs6666959 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6687454 | 1.00[ASN][1000 genomes] |
rs6694729 | 0.85[EUR][1000 genomes] |
rs67450539 | 1.00[ASN][1000 genomes] |
rs67880399 | 1.00[ASN][1000 genomes] |
rs72692834 | 1.00[ASN][1000 genomes] |
rs72692835 | 1.00[ASN][1000 genomes] |
rs72692837 | 1.00[ASN][1000 genomes] |
rs72692840 | 1.00[ASN][1000 genomes] |
rs72692842 | 1.00[ASN][1000 genomes] |
rs72692843 | 1.00[ASN][1000 genomes] |
rs72692849 | 1.00[ASN][1000 genomes] |
rs72692851 | 1.00[ASN][1000 genomes] |
rs72692854 | 1.00[ASN][1000 genomes] |
rs72692857 | 1.00[ASN][1000 genomes] |
rs72692861 | 1.00[ASN][1000 genomes] |
rs72692862 | 1.00[ASN][1000 genomes] |
rs72692865 | 1.00[ASN][1000 genomes] |
rs72692866 | 1.00[ASN][1000 genomes] |
rs72692869 | 1.00[ASN][1000 genomes] |
rs72692886 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72692893 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72692895 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72692896 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72692897 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72692898 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72692899 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72692900 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72692901 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72694905 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72694906 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72694908 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72694914 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72694915 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72694917 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72694918 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72694919 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72694923 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72694926 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72694927 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72694928 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72694933 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72694936 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72694942 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72694943 | 0.84[EUR][1000 genomes] |
rs72694944 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72694945 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72694946 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72694950 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72694951 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72694953 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72694954 | 0.86[EUR][1000 genomes] |
rs72694956 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72694957 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72694959 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72694960 | 0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72694961 | 0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72694964 | 0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72694965 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72694969 | 1.00[ASN][1000 genomes] |
rs72694974 | 1.00[ASN][1000 genomes] |
rs72694990 | 1.00[ASN][1000 genomes] |
rs72694993 | 1.00[ASN][1000 genomes] |
rs72696807 | 1.00[ASN][1000 genomes] |
rs72696808 | 1.00[ASN][1000 genomes] |
rs72696824 | 1.00[ASN][1000 genomes] |
rs72696828 | 1.00[ASN][1000 genomes] |
rs72696841 | 1.00[ASN][1000 genomes] |
rs72696848 | 1.00[ASN][1000 genomes] |
rs72696852 | 1.00[ASN][1000 genomes] |
rs72696859 | 1.00[ASN][1000 genomes] |
rs73008195 | 1.00[ASN][1000 genomes] |
rs7519918 | 1.00[ASN][1000 genomes] |
rs7520930 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7521768 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7521783 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7530922 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7532876 | 1.00[ASN][1000 genomes] |
rs7540847 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7544145 | 0.84[EUR][1000 genomes] |
rs7550323 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7553622 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7554367 | 1.00[ASN][1000 genomes] |
rs7555080 | 0.83[EUR][1000 genomes] |
rs942453 | 1.00[ASN][1000 genomes] |
rs9662055 | 1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv529719 | chr1:150006344-150311095 | Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 100 gene(s) | inside rSNPs | diseases |
2 | nsv535153 | chr1:150147218-150168829 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS | Chromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:150136400-150148800 | Weak transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
2 | chr1:150138400-150157800 | Weak transcription | Small Intestine | intestine |
3 | chr1:150141600-150148800 | Weak transcription | GM12878-XiMat | blood |
4 | chr1:150141600-150150000 | Weak transcription | Primary B cells from cord blood | blood |
5 | chr1:150141600-150158600 | Weak transcription | Primary B cells from peripheral blood | blood |
6 | chr1:150143600-150148400 | Weak transcription | Primary neutrophils fromperipheralblood | blood |
7 | chr1:150145400-150153000 | Weak transcription | Brain Substantia Nigra | brain |
8 | chr1:150145600-150148400 | Weak transcription | Adipose Nuclei | Adipose |
9 | chr1:150145800-150150400 | Weak transcription | Stomach Mucosa | stomach |
10 | chr1:150145800-150160000 | Weak transcription | Right Atrium | heart |
11 | chr1:150146000-150148400 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
12 | chr1:150146000-150151800 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
13 | chr1:150146000-150159200 | Weak transcription | HSMMtube | muscle |
14 | chr1:150146200-150149800 | Weak transcription | Fetal Intestine Large | intestine |
15 | chr1:150146200-150153400 | Weak transcription | Brain Anterior Caudate | brain |
16 | chr1:150146400-150148800 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
17 | chr1:150146400-150149200 | Weak transcription | Fetal Intestine Small | intestine |
18 | chr1:150146600-150149800 | Weak transcription | Duodenum Mucosa | Duodenum |
19 | chr1:150147000-150148600 | Enhancers | Monocytes-CD14+_RO01746 | blood |
20 | chr1:150147200-150159000 | Enhancers | Primary monocytes fromperipheralblood | blood |