The 2.0 version of rSNPBase

Variant report

Variant rs1824850
Chromosome Location chr1:150132430-150132431
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:150123200-150135400 Weak transcription A549 lung
2 chr1:150123400-150134400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
3 chr1:150123400-150134400 Weak transcription NHEK skin
4 chr1:150123800-150134200 Weak transcription HMEC breast
5 chr1:150123800-150134600 Weak transcription Pancreatic Islets Pancreatic Islet
6 chr1:150124400-150133400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
7 chr1:150124600-150133000 Strong transcription H9 Cell Line embryonic stem cell
8 chr1:150124600-150133200 Strong transcription HUES48 Cell Line embryonic stem cell
9 chr1:150124600-150133200 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
10 chr1:150124800-150133200 Strong transcription iPS-18 Cell Line embryonic stem cell
11 chr1:150125200-150132800 Strong transcription HUES64 Cell Line embryonic stem cell
12 chr1:150125200-150132800 Strong transcription iPS-20b Cell Line embryonic stem cell
13 chr1:150125200-150133000 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
14 chr1:150125200-150133600 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
15 chr1:150125400-150133000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
16 chr1:150125400-150133200 Genic enhancers HSMM muscle
17 chr1:150125400-150133600 Genic enhancers NH-A brain
18 chr1:150125600-150132800 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
19 chr1:150125600-150133200 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
20 chr1:150126200-150132600 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
21 chr1:150126400-150133000 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
22 chr1:150126600-150132600 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
23 chr1:150126800-150132800 Weak transcription Rectal Mucosa Donor 31 rectum
24 chr1:150126800-150133400 Weak transcription Right Atrium heart
25 chr1:150127200-150132800 Strong transcription Cortex derived primary cultured neurospheres brain
26 chr1:150127400-150132800 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
27 chr1:150127400-150132800 Weak transcription K562 blood
28 chr1:150127400-150133000 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
29 chr1:150127600-150133000 Genic enhancers Colon Smooth Muscle Colon
30 chr1:150128000-150133400 Genic enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
31 chr1:150128200-150133000 Strong transcription Fetal Brain Female brain
32 chr1:150128400-150133600 Weak transcription Fetal Brain Male brain
33 chr1:150128600-150132800 Weak transcription ES-I3 Cell Line embryonic stem cell
34 chr1:150129600-150133200 Genic enhancers Fetal Thymus thymus
35 chr1:150129800-150132600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
36 chr1:150129800-150132800 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
37 chr1:150129800-150132800 Weak transcription Small Intestine intestine
38 chr1:150129800-150133400 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
39 chr1:150129800-150134600 Weak transcription Brain Angular Gyrus brain
40 chr1:150130000-150133000 Weak transcription Colonic Mucosa Colon
41 chr1:150130000-150133400 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
42 chr1:150130000-150133800 Weak transcription Brain Substantia Nigra brain
43 chr1:150130200-150133000 Weak transcription Brain Hippocampus Middle brain
44 chr1:150130200-150133200 Strong transcription Osteobl bone
45 chr1:150130200-150133600 Weak transcription iPS-15b Cell Line embryonic stem cell
46 chr1:150130200-150134600 Enhancers Primary T helper memory cells from peripheral blood 2 blood
47 chr1:150130200-150134600 Weak transcription Psoas Muscle Psoas
48 chr1:150130400-150133400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
49 chr1:150130400-150133800 Genic enhancers Fetal Lung lung
50 chr1:150130600-150133000 Weak transcription Fetal Kidney kidney

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Last update: Aug 31, 2015