Variant report
| Variant | rs72692854 |
|---|---|
| Chromosome Location | chr1:149998923-149998924 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:6 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:149994846..149996547-chr1:149998372..149999923,2 | K562 | blood: | |
| 2 | chr1:149980818..149982590-chr1:149998214..149999820,2 | MCF-7 | breast: | |
| 3 | chr1:149997237..149999198-chr1:150001935..150003672,2 | MCF-7 | breast: | |
| 4 | chr1:149997826..149999584-chr1:150038104..150041099,2 | K562 | blood: | |
| 5 | chr1:149993912..149996492-chr1:149997463..150000045,2 | MCF-7 | breast: | |
| 6 | chr1:149860175..149862937-chr1:149996186..149999039,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000136631 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:203)
| rs_ID | r2[population] |
|---|---|
| rs10494261 | 1.00[ASN][1000 genomes] |
| rs10494264 | 1.00[ASN][1000 genomes] |
| rs10494363 | 1.00[ASN][1000 genomes] |
| rs10749674 | 1.00[ASN][1000 genomes] |
| rs10888568 | 1.00[ASN][1000 genomes] |
| rs1105209 | 1.00[ASN][1000 genomes] |
| rs11205307 | 1.00[ASN][1000 genomes] |
| rs11205308 | 1.00[ASN][1000 genomes] |
| rs11205317 | 1.00[ASN][1000 genomes] |
| rs11205319 | 1.00[ASN][1000 genomes] |
| rs11205321 | 1.00[ASN][1000 genomes] |
| rs11205326 | 1.00[ASN][1000 genomes] |
| rs11205331 | 1.00[ASN][1000 genomes] |
| rs11205333 | 1.00[ASN][1000 genomes] |
| rs11576997 | 1.00[ASN][1000 genomes] |
| rs11577346 | 1.00[ASN][1000 genomes] |
| rs11580307 | 1.00[ASN][1000 genomes] |
| rs11583720 | 1.00[ASN][1000 genomes] |
| rs11584091 | 1.00[ASN][1000 genomes] |
| rs11584354 | 1.00[ASN][1000 genomes] |
| rs11584606 | 1.00[ASN][1000 genomes] |
| rs11585955 | 1.00[ASN][1000 genomes] |
| rs11587963 | 1.00[ASN][1000 genomes] |
| rs11588837 | 1.00[ASN][1000 genomes] |
| rs11589585 | 1.00[ASN][1000 genomes] |
| rs11589801 | 1.00[ASN][1000 genomes] |
| rs11589922 | 1.00[ASN][1000 genomes] |
| rs11591200 | 1.00[ASN][1000 genomes] |
| rs12058090 | 1.00[ASN][1000 genomes] |
| rs12058502 | 1.00[ASN][1000 genomes] |
| rs12060027 | 1.00[ASN][1000 genomes] |
| rs12060211 | 1.00[ASN][1000 genomes] |
| rs12060830 | 1.00[ASN][1000 genomes] |
| rs12061196 | 1.00[ASN][1000 genomes] |
| rs12061565 | 1.00[ASN][1000 genomes] |
| rs12061856 | 1.00[ASN][1000 genomes] |
| rs12062861 | 1.00[ASN][1000 genomes] |
| rs12063059 | 1.00[ASN][1000 genomes] |
| rs12063281 | 1.00[ASN][1000 genomes] |
| rs12063329 | 1.00[ASN][1000 genomes] |
| rs12065681 | 1.00[ASN][1000 genomes] |
| rs12066132 | 1.00[ASN][1000 genomes] |
| rs12066293 | 1.00[ASN][1000 genomes] |
| rs12067422 | 1.00[ASN][1000 genomes] |
| rs12073359 | 1.00[ASN][1000 genomes] |
| rs12074281 | 1.00[ASN][1000 genomes] |
| rs12077623 | 1.00[ASN][1000 genomes] |
| rs12078573 | 1.00[ASN][1000 genomes] |
| rs12081082 | 1.00[ASN][1000 genomes] |
| rs12086155 | 1.00[ASN][1000 genomes] |
| rs12087578 | 1.00[ASN][1000 genomes] |
| rs12093499 | 1.00[ASN][1000 genomes] |
| rs12098106 | 1.00[ASN][1000 genomes] |
| rs12124898 | 1.00[ASN][1000 genomes] |
| rs12138231 | 1.00[ASN][1000 genomes] |
| rs1339494 | 1.00[ASN][1000 genomes] |
| rs1339495 | 1.00[ASN][1000 genomes] |
| rs1382573 | 1.00[ASN][1000 genomes] |
| rs1545762 | 1.00[ASN][1000 genomes] |
| rs16833149 | 1.00[ASN][1000 genomes] |
| rs16835254 | 1.00[ASN][1000 genomes] |
| rs16836630 | 1.00[ASN][1000 genomes] |
| rs17643644 | 1.00[ASN][1000 genomes] |
| rs1804775 | 1.00[ASN][1000 genomes] |
| rs1824849 | 1.00[ASN][1000 genomes] |
| rs1824850 | 1.00[ASN][1000 genomes] |
| rs1964542 | 1.00[ASN][1000 genomes] |
| rs1975957 | 1.00[ASN][1000 genomes] |
| rs2027349 | 1.00[ASN][1000 genomes] |
| rs2039800 | 1.00[ASN][1000 genomes] |
| rs2044891 | 1.00[ASN][1000 genomes] |
| rs2198194 | 1.00[ASN][1000 genomes] |
| rs2318763 | 1.00[ASN][1000 genomes] |
| rs2319280 | 1.00[ASN][1000 genomes] |
| rs28366567 | 1.00[ASN][1000 genomes] |
| rs28443768 | 1.00[ASN][1000 genomes] |
| rs28560140 | 1.00[ASN][1000 genomes] |
| rs28660389 | 1.00[ASN][1000 genomes] |
| rs28753817 | 1.00[ASN][1000 genomes] |
| rs3118119 | 1.00[ASN][1000 genomes] |
| rs3208509 | 1.00[ASN][1000 genomes] |
| rs35230744 | 1.00[ASN][1000 genomes] |
| rs3850838 | 1.00[ASN][1000 genomes] |
| rs3925724 | 1.00[ASN][1000 genomes] |
| rs4058847 | 1.00[ASN][1000 genomes] |
| rs41264630 | 1.00[ASN][1000 genomes] |
| rs41265185 | 1.00[ASN][1000 genomes] |
| rs41302101 | 1.00[ASN][1000 genomes] |
| rs45548131 | 1.00[ASN][1000 genomes] |
| rs4926407 | 1.00[ASN][1000 genomes] |
| rs4926408 | 1.00[ASN][1000 genomes] |
| rs4926411 | 1.00[ASN][1000 genomes] |
| rs4926412 | 1.00[ASN][1000 genomes] |
| rs55633125 | 1.00[ASN][1000 genomes] |
| rs55647342 | 1.00[ASN][1000 genomes] |
| rs55705001 | 1.00[ASN][1000 genomes] |
| rs55802315 | 1.00[ASN][1000 genomes] |
| rs55840680 | 1.00[ASN][1000 genomes] |
| rs55840906 | 1.00[ASN][1000 genomes] |
| rs55909733 | 1.00[ASN][1000 genomes] |
| rs55918911 | 1.00[ASN][1000 genomes] |
| rs55963510 | 1.00[ASN][1000 genomes] |
| rs56125600 | 1.00[ASN][1000 genomes] |
| rs56188926 | 1.00[ASN][1000 genomes] |
| rs56212907 | 1.00[ASN][1000 genomes] |
| rs56265028 | 1.00[ASN][1000 genomes] |
| rs56305459 | 1.00[ASN][1000 genomes] |
| rs56349882 | 1.00[ASN][1000 genomes] |
| rs56369603 | 1.00[ASN][1000 genomes] |
| rs56892994 | 1.00[ASN][1000 genomes] |
| rs58395667 | 1.00[ASN][1000 genomes] |
| rs58426216 | 1.00[ASN][1000 genomes] |
| rs59054339 | 1.00[ASN][1000 genomes] |
| rs59607464 | 1.00[ASN][1000 genomes] |
| rs6657062 | 1.00[ASN][1000 genomes] |
| rs66649150 | 1.00[ASN][1000 genomes] |
| rs6666959 | 1.00[ASN][1000 genomes] |
| rs6687454 | 1.00[ASN][1000 genomes] |
| rs67450539 | 1.00[ASN][1000 genomes] |
| rs67880399 | 1.00[ASN][1000 genomes] |
| rs68144650 | 1.00[ASN][1000 genomes] |
| rs72692803 | 1.00[ASN][1000 genomes] |
| rs72692804 | 1.00[ASN][1000 genomes] |
| rs72692805 | 1.00[ASN][1000 genomes] |
| rs72692807 | 1.00[ASN][1000 genomes] |
| rs72692808 | 1.00[ASN][1000 genomes] |
| rs72692810 | 1.00[ASN][1000 genomes] |
| rs72692811 | 1.00[ASN][1000 genomes] |
| rs72692812 | 1.00[ASN][1000 genomes] |
| rs72692813 | 1.00[ASN][1000 genomes] |
| rs72692814 | 1.00[ASN][1000 genomes] |
| rs72692816 | 1.00[ASN][1000 genomes] |
| rs72692818 | 1.00[ASN][1000 genomes] |
| rs72692819 | 1.00[ASN][1000 genomes] |
| rs72692834 | 1.00[ASN][1000 genomes] |
| rs72692835 | 1.00[ASN][1000 genomes] |
| rs72692837 | 1.00[ASN][1000 genomes] |
| rs72692840 | 1.00[ASN][1000 genomes] |
| rs72692842 | 1.00[ASN][1000 genomes] |
| rs72692843 | 1.00[ASN][1000 genomes] |
| rs72692849 | 1.00[ASN][1000 genomes] |
| rs72692851 | 1.00[ASN][1000 genomes] |
| rs72692857 | 1.00[ASN][1000 genomes] |
| rs72692861 | 1.00[ASN][1000 genomes] |
| rs72692862 | 1.00[ASN][1000 genomes] |
| rs72692865 | 1.00[ASN][1000 genomes] |
| rs72692866 | 1.00[ASN][1000 genomes] |
| rs72692869 | 1.00[ASN][1000 genomes] |
| rs72692886 | 1.00[ASN][1000 genomes] |
| rs72692893 | 1.00[ASN][1000 genomes] |
| rs72692895 | 1.00[ASN][1000 genomes] |
| rs72692896 | 1.00[ASN][1000 genomes] |
| rs72692897 | 1.00[ASN][1000 genomes] |
| rs72692898 | 1.00[ASN][1000 genomes] |
| rs72692899 | 1.00[ASN][1000 genomes] |
| rs72692900 | 1.00[ASN][1000 genomes] |
| rs72692901 | 1.00[ASN][1000 genomes] |
| rs72694905 | 1.00[ASN][1000 genomes] |
| rs72694906 | 1.00[ASN][1000 genomes] |
| rs72694908 | 1.00[ASN][1000 genomes] |
| rs72694914 | 1.00[ASN][1000 genomes] |
| rs72694915 | 1.00[ASN][1000 genomes] |
| rs72694917 | 1.00[ASN][1000 genomes] |
| rs72694918 | 1.00[ASN][1000 genomes] |
| rs72694919 | 1.00[ASN][1000 genomes] |
| rs72694923 | 1.00[ASN][1000 genomes] |
| rs72694926 | 1.00[ASN][1000 genomes] |
| rs72694927 | 1.00[ASN][1000 genomes] |
| rs72694928 | 1.00[ASN][1000 genomes] |
| rs72694933 | 1.00[ASN][1000 genomes] |
| rs72694936 | 1.00[ASN][1000 genomes] |
| rs72694942 | 1.00[ASN][1000 genomes] |
| rs72694944 | 1.00[ASN][1000 genomes] |
| rs72694945 | 1.00[ASN][1000 genomes] |
| rs72694946 | 1.00[ASN][1000 genomes] |
| rs72694950 | 1.00[ASN][1000 genomes] |
| rs72694951 | 1.00[ASN][1000 genomes] |
| rs72694953 | 1.00[ASN][1000 genomes] |
| rs72694956 | 1.00[ASN][1000 genomes] |
| rs72694957 | 1.00[ASN][1000 genomes] |
| rs72694959 | 1.00[ASN][1000 genomes] |
| rs72694960 | 1.00[ASN][1000 genomes] |
| rs72694961 | 1.00[ASN][1000 genomes] |
| rs72694962 | 1.00[ASN][1000 genomes] |
| rs72694964 | 1.00[ASN][1000 genomes] |
| rs72694965 | 1.00[ASN][1000 genomes] |
| rs72694969 | 1.00[ASN][1000 genomes] |
| rs72694974 | 1.00[ASN][1000 genomes] |
| rs72694990 | 1.00[ASN][1000 genomes] |
| rs72708162 | 1.00[ASN][1000 genomes] |
| rs73008195 | 1.00[ASN][1000 genomes] |
| rs7519918 | 1.00[ASN][1000 genomes] |
| rs7520930 | 1.00[ASN][1000 genomes] |
| rs7521768 | 1.00[ASN][1000 genomes] |
| rs7521783 | 1.00[ASN][1000 genomes] |
| rs7530922 | 1.00[ASN][1000 genomes] |
| rs7532876 | 1.00[ASN][1000 genomes] |
| rs7540847 | 1.00[ASN][1000 genomes] |
| rs7544531 | 1.00[ASN][1000 genomes] |
| rs7550323 | 1.00[ASN][1000 genomes] |
| rs7553622 | 1.00[ASN][1000 genomes] |
| rs7554367 | 1.00[ASN][1000 genomes] |
| rs9662055 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831537 | chr1:149833357-150064655 | Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 431 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:149985600-150022000 | Weak transcription | Brain Substantia Nigra | brain |
| 2 | chr1:149993800-150005400 | Weak transcription | Fetal Heart | heart |
| 3 | chr1:149996600-150037000 | Weak transcription | Left Ventricle | heart |
| 4 | chr1:149998200-150001400 | Weak transcription | Stomach Mucosa | stomach |
