Variant report

Variant	rs56305459
Chromosome Location	chr1:150184794-150184795
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:150182307..150185860-chr1:150205787..150209000,3	K562	blood:
2	chr1:150182307..150184946-chr1:150207119..150209000,2	K562	blood:
3	chr1:149956254..149958159-chr1:150184298..150186686,2	MCF-7	breast:
4	chr1:150184759..150186606-chr1:150253891..150255792,2	MCF-7	breast:
5	chr1:149854142..149859760-chr1:150182757..150186625,7	MCF-7	breast:
6	chr1:150184319..150187106-chr1:150241598..150243125,2	MCF-7	breast:
7	chr1:150184020..150189547-chr1:150205905..150210191,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000184260	Chromatin interaction
ENSG00000184270	Chromatin interaction
ENSG00000143401	Chromatin interaction
ENSG00000117362	Chromatin interaction
ENSG00000159208	Chromatin interaction
ENSG00000222222	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000178096	Chromatin interaction

Extended variants
information (count: 224 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:223)

rs_ID	r²[population]
rs10494261	1.00[ASN][1000 genomes]
rs10494264	1.00[ASN][1000 genomes]
rs10749674	1.00[ASN][1000 genomes]
rs10888568	1.00[ASN][1000 genomes]
rs1105209	1.00[ASN][1000 genomes]
rs11205317	1.00[ASN][1000 genomes]
rs11205319	1.00[ASN][1000 genomes]
rs11205321	1.00[ASN][1000 genomes]
rs11205326	1.00[ASN][1000 genomes]
rs11205331	1.00[ASN][1000 genomes]
rs11205333	1.00[ASN][1000 genomes]
rs11205361	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11205362	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11205374	1.00[ASN][1000 genomes]
rs11548267	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11576289	1.00[ASN][1000 genomes]
rs11576293	1.00[ASN][1000 genomes]
rs11576997	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11577346	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11578585	1.00[ASN][1000 genomes]
rs11579087	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11579341	1.00[ASN][1000 genomes]
rs11580234	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11580307	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11580764	1.00[ASN][1000 genomes]
rs11582835	1.00[ASN][1000 genomes]
rs11583720	1.00[ASN][1000 genomes]
rs11584070	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11584091	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11584354	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11584606	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11584761	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11585955	1.00[ASN][1000 genomes]
rs11586880	1.00[ASN][1000 genomes]
rs11587606	1.00[ASN][1000 genomes]
rs11587682	1.00[ASN][1000 genomes]
rs11587837	1.00[ASN][1000 genomes]
rs11587963	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11588221	1.00[ASN][1000 genomes]
rs11588837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11589585	1.00[ASN][1000 genomes]
rs11589801	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11589922	1.00[ASN][1000 genomes]
rs11591200	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12058090	1.00[ASN][1000 genomes]
rs12058502	1.00[ASN][1000 genomes]
rs12060027	1.00[ASN][1000 genomes]
rs12060211	1.00[ASN][1000 genomes]
rs12060830	1.00[ASN][1000 genomes]
rs12061196	1.00[ASN][1000 genomes]
rs12061565	1.00[ASN][1000 genomes]
rs12061856	1.00[ASN][1000 genomes]
rs12062861	1.00[ASN][1000 genomes]
rs12063059	1.00[ASN][1000 genomes]
rs12063281	1.00[ASN][1000 genomes]
rs12063329	1.00[ASN][1000 genomes]
rs12065681	1.00[ASN][1000 genomes]
rs12066132	1.00[ASN][1000 genomes]
rs12066293	1.00[ASN][1000 genomes]
rs12067422	1.00[ASN][1000 genomes]
rs12073359	1.00[ASN][1000 genomes]
rs12074281	1.00[ASN][1000 genomes]
rs12077623	1.00[ASN][1000 genomes]
rs12081082	1.00[ASN][1000 genomes]
rs12086155	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12087578	1.00[ASN][1000 genomes]
rs12093499	1.00[ASN][1000 genomes]
rs12098106	1.00[ASN][1000 genomes]
rs12119320	1.00[ASN][1000 genomes]
rs12120683	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12120867	1.00[ASN][1000 genomes]
rs12123044	1.00[ASN][1000 genomes]
rs12124898	1.00[ASN][1000 genomes]
rs12126312	1.00[ASN][1000 genomes]
rs12128385	1.00[ASN][1000 genomes]
rs12138231	1.00[ASN][1000 genomes]
rs12138787	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12139286	1.00[ASN][1000 genomes]
rs12142178	1.00[ASN][1000 genomes]
rs12142331	1.00[ASN][1000 genomes]
rs12144958	1.00[ASN][1000 genomes]
rs12145630	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1339494	1.00[ASN][1000 genomes]
rs1339495	1.00[ASN][1000 genomes]
rs1382573	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1545762	1.00[ASN][1000 genomes]
rs16833149	1.00[ASN][1000 genomes]
rs16835254	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16835780	1.00[ASN][1000 genomes]
rs1824849	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1824850	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1964542	1.00[ASN][1000 genomes]
rs1975957	1.00[ASN][1000 genomes]
rs2027349	1.00[ASN][1000 genomes]
rs2039800	1.00[ASN][1000 genomes]
rs2133128	1.00[ASN][1000 genomes]
rs2318763	1.00[ASN][1000 genomes]
rs2319280	1.00[ASN][1000 genomes]
rs28366567	1.00[ASN][1000 genomes]
rs28443768	1.00[ASN][1000 genomes]
rs28560019	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28560140	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28660389	1.00[ASN][1000 genomes]
rs28753817	1.00[ASN][1000 genomes]
rs3118119	1.00[ASN][1000 genomes]
rs3208509	1.00[ASN][1000 genomes]
rs34755378	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3850838	1.00[ASN][1000 genomes]
rs3925724	1.00[ASN][1000 genomes]
rs4058847	1.00[ASN][1000 genomes]
rs41300865	1.00[ASN][1000 genomes]
rs4265470	1.00[ASN][1000 genomes]
rs4926407	1.00[ASN][1000 genomes]
rs4926408	1.00[ASN][1000 genomes]
rs4926411	1.00[ASN][1000 genomes]
rs4926412	1.00[ASN][1000 genomes]
rs55633125	1.00[ASN][1000 genomes]
rs55647342	1.00[ASN][1000 genomes]
rs55802315	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs55840680	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs55840906	1.00[ASN][1000 genomes]
rs55909733	1.00[ASN][1000 genomes]
rs55918911	1.00[ASN][1000 genomes]
rs55963510	1.00[ASN][1000 genomes]
rs55973252	1.00[ASN][1000 genomes]
rs56125600	1.00[ASN][1000 genomes]
rs56133109	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56188926	1.00[ASN][1000 genomes]
rs56212907	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56349882	1.00[ASN][1000 genomes]
rs56369603	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56397877	1.00[AFR][1000 genomes]
rs56892994	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58395667	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58426216	1.00[ASN][1000 genomes]
rs59054339	1.00[ASN][1000 genomes]
rs59607464	1.00[ASN][1000 genomes]
rs6657062	1.00[ASN][1000 genomes]
rs66649150	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6666959	1.00[ASN][1000 genomes]
rs6687454	1.00[ASN][1000 genomes]
rs67450539	1.00[ASN][1000 genomes]
rs67880399	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692834	1.00[ASN][1000 genomes]
rs72692835	1.00[ASN][1000 genomes]
rs72692837	1.00[ASN][1000 genomes]
rs72692840	1.00[ASN][1000 genomes]
rs72692842	1.00[ASN][1000 genomes]
rs72692843	1.00[ASN][1000 genomes]
rs72692849	1.00[ASN][1000 genomes]
rs72692851	1.00[ASN][1000 genomes]
rs72692854	1.00[ASN][1000 genomes]
rs72692857	1.00[ASN][1000 genomes]
rs72692861	1.00[ASN][1000 genomes]
rs72692862	1.00[ASN][1000 genomes]
rs72692865	1.00[ASN][1000 genomes]
rs72692866	1.00[ASN][1000 genomes]
rs72692869	1.00[ASN][1000 genomes]
rs72692873	1.00[AFR][1000 genomes]
rs72692886	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72692893	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72692895	1.00[ASN][1000 genomes]
rs72692896	1.00[ASN][1000 genomes]
rs72692897	1.00[ASN][1000 genomes]
rs72692898	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72692899	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72692900	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72692901	1.00[ASN][1000 genomes]
rs72694905	1.00[ASN][1000 genomes]
rs72694906	1.00[ASN][1000 genomes]
rs72694908	1.00[ASN][1000 genomes]
rs72694914	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72694915	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72694917	1.00[ASN][1000 genomes]
rs72694918	1.00[ASN][1000 genomes]
rs72694919	1.00[ASN][1000 genomes]
rs72694923	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72694926	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72694927	1.00[ASN][1000 genomes]
rs72694928	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72694933	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72694936	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72694942	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72694944	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72694945	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72694946	1.00[ASN][1000 genomes]
rs72694950	1.00[ASN][1000 genomes]
rs72694951	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72694953	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72694956	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72694957	1.00[ASN][1000 genomes]
rs72694959	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72694960	1.00[ASN][1000 genomes]
rs72694961	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72694962	1.00[ASN][1000 genomes]
rs72694964	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72694965	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72694969	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72694974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694990	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694993	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72696807	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72696808	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72696824	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72696828	1.00[ASN][1000 genomes]
rs72696841	1.00[ASN][1000 genomes]
rs72696848	1.00[ASN][1000 genomes]
rs72696852	1.00[ASN][1000 genomes]
rs72696859	1.00[ASN][1000 genomes]
rs72696873	1.00[ASN][1000 genomes]
rs7519918	1.00[ASN][1000 genomes]
rs7520930	1.00[ASN][1000 genomes]
rs7521768	1.00[ASN][1000 genomes]
rs7521783	1.00[ASN][1000 genomes]
rs7530922	1.00[ASN][1000 genomes]
rs7532876	1.00[ASN][1000 genomes]
rs7540847	1.00[ASN][1000 genomes]
rs7550323	1.00[ASN][1000 genomes]
rs7553622	1.00[ASN][1000 genomes]
rs7554367	1.00[ASN][1000 genomes]
rs942453	1.00[ASN][1000 genomes]
rs9662055	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150180200-150185200	Weak transcription	Hela-S3	cervix
2	chr1:150180200-150185400	Weak transcription	Liver	Liver
3	chr1:150180200-150185400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr1:150180200-150185400	Weak transcription	Fetal Intestine Large	intestine
5	chr1:150180200-150185400	Weak transcription	Fetal Intestine Small	intestine
6	chr1:150180200-150185400	Weak transcription	Stomach Mucosa	stomach
7	chr1:150180200-150185400	Weak transcription	A549	lung
8	chr1:150180200-150185400	Weak transcription	HepG2	liver
9	chr1:150180400-150185400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr1:150183400-150185400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr1:150184200-150195800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr1:150184200-150206600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links