The 2.0 version of rSNPBase

Variant report

Variant rs72692840
Chromosome Location chr1:149992594-149992595
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:38 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:149982800-149994400 Weak transcription Gastric stomach
2 chr1:149983000-149992800 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr1:149985000-149993200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
4 chr1:149985200-149993200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
5 chr1:149985400-149993000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
6 chr1:149985600-149994000 Weak transcription Brain Hippocampus Middle brain
7 chr1:149985600-150022000 Weak transcription Brain Substantia Nigra brain
8 chr1:149988000-149993200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
9 chr1:149988200-149992800 Weak transcription Adipose Nuclei Adipose
10 chr1:149988200-149992800 Weak transcription A549 lung
11 chr1:149988200-149993200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
12 chr1:149988200-149993200 Weak transcription Osteobl bone
13 chr1:149988400-149993200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
14 chr1:149989600-149993200 Weak transcription Skeletal Muscle Male skeletal muscle
15 chr1:149989600-149993200 Weak transcription K562 blood
16 chr1:149989600-149997800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
17 chr1:149989600-149998000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
18 chr1:149989800-149993200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
19 chr1:149989800-149993200 Weak transcription NHEK skin
20 chr1:149989800-149993400 Weak transcription iPS-20b Cell Line embryonic stem cell
21 chr1:149989800-149993400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
22 chr1:149989800-149993400 Weak transcription HMEC breast
23 chr1:149989800-149993600 Weak transcription HUES48 Cell Line embryonic stem cell
24 chr1:149990000-149992800 Weak transcription Fetal Intestine Large intestine
25 chr1:149990000-149992800 Weak transcription Rectal Mucosa Donor 31 rectum
26 chr1:149990000-149993200 Weak transcription Skeletal Muscle Female skeletal muscle
27 chr1:149990000-149993400 Weak transcription ES-I3 Cell Line embryonic stem cell
28 chr1:149990000-149993400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
29 chr1:149990000-149993600 Weak transcription HUES6 Cell Line embryonic stem cell
30 chr1:149990400-149993200 Weak transcription Placenta Placenta
31 chr1:149990600-149992600 Weak transcription Stomach Mucosa stomach
32 chr1:149990600-149992600 Weak transcription Hela-S3 cervix
33 chr1:149990600-149992800 Weak transcription Rectal Mucosa Donor 29 rectum
34 chr1:149990600-149998000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
35 chr1:149991000-149992800 Weak transcription Fetal Intestine Small intestine
36 chr1:149991000-149996000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
37 chr1:149992200-149992600 Weak transcription Pancreas Pancrea
38 chr1:149992400-149993200 Enhancers Liver Liver

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Last update: Aug 31, 2015