The 2.0 version of rSNPBase

Variant report

Variant rs72692816
Chromosome Location chr1:149902588-149902589
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:85 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:149900000-149903800 Flanking Active TSS Primary monocytes fromperipheralblood blood
2 chr1:149900000-149904400 Flanking Active TSS Monocytes-CD14+_RO01746 blood
3 chr1:149900400-149903600 Weak transcription Lung lung
4 chr1:149900400-149903800 Weak transcription Gastric stomach
5 chr1:149900400-149906400 Genic enhancers Fetal Intestine Small intestine
6 chr1:149900400-149907800 Weak transcription Esophagus oesophagus
7 chr1:149900400-149907800 Weak transcription Pancreas Pancrea
8 chr1:149900400-149908400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr1:149900600-149902800 Enhancers HSMMtube muscle
10 chr1:149900600-149903800 Genic enhancers Fetal Muscle Leg muscle
11 chr1:149900600-149906200 Genic enhancers Fetal Intestine Large intestine
12 chr1:149900600-149906200 Weak transcription Left Ventricle heart
13 chr1:149900600-149907600 Weak transcription Fetal Brain Male brain
14 chr1:149900600-149907800 Weak transcription Pancreatic Islets Pancreatic Islet
15 chr1:149900600-149908200 Weak transcription Right Ventricle heart
16 chr1:149900600-149908400 Weak transcription H9 Cell Line embryonic stem cell
17 chr1:149900800-149902800 Genic enhancers Rectal Mucosa Donor 31 rectum
18 chr1:149900800-149903000 Genic enhancers Foreskin Fibroblast Primary Cells skin01 Skin
19 chr1:149900800-149903000 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
20 chr1:149900800-149903000 Weak transcription HMEC breast
21 chr1:149900800-149903000 Weak transcription HUVEC blood vessel
22 chr1:149900800-149903600 Weak transcription Fetal Kidney kidney
23 chr1:149900800-149904000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
24 chr1:149900800-149904000 Strong transcription A549 lung
25 chr1:149900800-149905600 Weak transcription Brain Substantia Nigra brain
26 chr1:149900800-149905600 Strong transcription Duodenum Smooth Muscle Duodenum
27 chr1:149900800-149905800 Weak transcription Skeletal Muscle Male skeletal muscle
28 chr1:149900800-149905800 Weak transcription Skeletal Muscle Female skeletal muscle
29 chr1:149900800-149906400 Weak transcription Adipose Nuclei Adipose
30 chr1:149900800-149907200 Weak transcription HepG2 liver
31 chr1:149900800-149907600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
32 chr1:149900800-149907600 Weak transcription Liver Liver
33 chr1:149900800-149907800 Weak transcription Brain Germinal Matrix brain
34 chr1:149900800-149907800 Weak transcription HSMM muscle
35 chr1:149900800-149908000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
36 chr1:149900800-149908200 Weak transcription HUES6 Cell Line embryonic stem cell
37 chr1:149901000-149902600 Strong transcription NHDF-Ad bronchial
38 chr1:149901000-149902800 Weak transcription Hela-S3 cervix
39 chr1:149901000-149903000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
40 chr1:149901000-149903200 Weak transcription ES-I3 Cell Line embryonic stem cell
41 chr1:149901000-149903200 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
42 chr1:149901000-149904000 Strong transcription Colon Smooth Muscle Colon
43 chr1:149901000-149904000 Strong transcription Fetal Lung lung
44 chr1:149901000-149906000 Strong transcription Breast Myoepithelial Primary Cells Breast
45 chr1:149901000-149906000 Weak transcription Small Intestine intestine
46 chr1:149901000-149906000 Strong transcription Stomach Smooth Muscle stomach
47 chr1:149901000-149906200 Strong transcription Placenta Placenta
48 chr1:149901000-149906600 Strong transcription Cortex derived primary cultured neurospheres brain
49 chr1:149901000-149907800 Weak transcription Brain Angular Gyrus brain
50 chr1:149901200-149903200 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung

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Last update: Aug 31, 2015