Variant report

Variant	rs6682495
Chromosome Location	chr1:149922694-149922695
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:149916780..149919549-chr1:149921905..149924910,3	MCF-7	breast:
2	chr1:149914919..149917258-chr1:149922279..149925804,3	K562	blood:
3	chr1:149917288..149919017-chr1:149922295..149924895,2	K562	blood:
4	chr1:149911926..149914059-chr1:149920951..149923919,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10494261	0.93[EUR][1000 genomes]
rs10494363	0.93[EUR][1000 genomes]
rs11205307	0.93[EUR][1000 genomes]
rs11205308	0.93[EUR][1000 genomes]
rs12077623	0.93[EUR][1000 genomes]
rs12078573	0.90[EUR][1000 genomes]
rs12081082	0.93[EUR][1000 genomes]
rs16835135	0.84[EUR][1000 genomes]
rs16836630	0.88[EUR][1000 genomes]
rs17643644	0.90[EUR][1000 genomes]
rs1804775	0.90[EUR][1000 genomes]
rs2044891	0.93[EUR][1000 genomes]
rs2198194	0.93[EUR][1000 genomes]
rs35230744	0.93[EUR][1000 genomes]
rs41264630	0.87[EUR][1000 genomes]
rs41265185	0.93[EUR][1000 genomes]
rs41302101	0.93[EUR][1000 genomes]
rs45548131	0.88[EUR][1000 genomes]
rs55705001	0.88[EUR][1000 genomes]
rs56265028	0.88[EUR][1000 genomes]
rs67450539	0.80[EUR][1000 genomes]
rs68002561	0.80[EUR][1000 genomes]
rs68144650	0.88[EUR][1000 genomes]
rs72692803	0.87[EUR][1000 genomes]
rs72692804	0.88[EUR][1000 genomes]
rs72692805	0.88[EUR][1000 genomes]
rs72692807	0.88[EUR][1000 genomes]
rs72692808	0.88[EUR][1000 genomes]
rs72692810	0.88[EUR][1000 genomes]
rs72692811	0.88[EUR][1000 genomes]
rs72692812	0.88[EUR][1000 genomes]
rs72692813	0.90[EUR][1000 genomes]
rs72692814	0.90[EUR][1000 genomes]
rs72692816	0.90[EUR][1000 genomes]
rs72692818	0.90[EUR][1000 genomes]
rs72692819	0.90[EUR][1000 genomes]
rs72708158	0.82[EUR][1000 genomes]
rs72708162	0.88[EUR][1000 genomes]
rs73008195	0.93[EUR][1000 genomes]
rs7524797	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831537	chr1:149833357-150064655	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	431 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:149909400-149947000	Weak transcription	Fetal Brain Male	brain
2	chr1:149910000-149934200	Weak transcription	Primary T cells from cord blood	blood
3	chr1:149910200-149929800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr1:149911400-149933800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr1:149912600-149941600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr1:149912800-149933800	Weak transcription	Stomach Mucosa	stomach
7	chr1:149914400-149937400	Weak transcription	Fetal Heart	heart
8	chr1:149914800-149924600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr1:149915000-149922800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:149915000-149923600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr1:149915000-149937600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr1:149915200-149923600	Strong transcription	Liver	Liver
13	chr1:149915400-149923400	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr1:149915400-149923400	Strong transcription	Fetal Intestine Small	intestine
15	chr1:149915600-149923600	Strong transcription	Duodenum Mucosa	Duodenum
16	chr1:149915600-149923600	Strong transcription	Left Ventricle	heart
17	chr1:149915600-149923800	Strong transcription	Skeletal Muscle Female	skeletal muscle
18	chr1:149915600-149924000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr1:149916800-149924000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr1:149917000-149929200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr1:149917000-149929400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr1:149917200-149931400	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr1:149917400-149929600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr1:149917600-149929400	Weak transcription	Brain Germinal Matrix	brain
25	chr1:149917600-149929600	Weak transcription	Fetal Kidney	kidney
26	chr1:149918800-149923800	Strong transcription	HUES64 Cell Line	embryonic stem cell
27	chr1:149919000-149923800	Strong transcription	Osteobl	bone
28	chr1:149919000-149924400	Strong transcription	Brain Hippocampus Middle	brain
29	chr1:149919400-149924000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr1:149919800-149930000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr1:149919800-149930000	Weak transcription	Hela-S3	cervix
32	chr1:149920200-149928200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr1:149920200-149929400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr1:149921000-149929800	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr1:149921200-149942600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr1:149921800-149929600	Weak transcription	Brain Angular Gyrus	brain
37	chr1:149921800-149929600	Weak transcription	Esophagus	oesophagus
38	chr1:149922000-149929400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr1:149922000-149929600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr1:149922200-149923400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr1:149922200-149929200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr1:149922200-149929200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr1:149922200-149929200	Weak transcription	Fetal Stomach	stomach
44	chr1:149922200-149929400	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr1:149922200-149929400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr1:149922200-149929400	Weak transcription	Gastric	stomach
47	chr1:149922200-149929400	Weak transcription	Lung	lung
48	chr1:149922200-149929400	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr1:149922200-149929400	Weak transcription	Spleen	Spleen
50	chr1:149922200-149929600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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