The 2.0 version of rSNPBase

Variant report

Variant rs1804775
Chromosome Location chr1:149900610-149900611
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:121 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:149898800-149900800 Active TSS H1 Cell Line embryonic stem cell
2 chr1:149899000-149900800 Active TSS HUES64 Cell Line embryonic stem cell
3 chr1:149899000-149901000 Active TSS ES-I3 Cell Line embryonic stem cell
4 chr1:149899800-149900800 Flanking Active TSS Primary T regulatory cells fromperipheralblood blood
5 chr1:149900000-149900800 Flanking Active TSS H9 Derived Neuron Cultured Cells ES cell derived
6 chr1:149900000-149900800 Flanking Active TSS Primary neutrophils fromperipheralblood blood
7 chr1:149900000-149900800 Flanking Active TSS Primary T cells fromperipheralblood blood
8 chr1:149900000-149900800 Flanking Active TSS Primary hematopoietic stem cells short term culture blood
9 chr1:149900000-149900800 Flanking Active TSS Primary T helper naive cells fromperipheralblood blood
10 chr1:149900000-149900800 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
11 chr1:149900000-149900800 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
12 chr1:149900000-149900800 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
13 chr1:149900000-149900800 Flanking Active TSS Muscle Satellite Cultured Cells --
14 chr1:149900000-149900800 Flanking Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
15 chr1:149900000-149900800 Flanking Active TSS Duodenum Mucosa Duodenum
16 chr1:149900000-149900800 Active TSS Right Atrium heart
17 chr1:149900000-149900800 Flanking Active TSS Skeletal Muscle Male skeletal muscle
18 chr1:149900000-149900800 Flanking Active TSS Skeletal Muscle Female skeletal muscle
19 chr1:149900000-149903800 Flanking Active TSS Primary monocytes fromperipheralblood blood
20 chr1:149900000-149904400 Flanking Active TSS Monocytes-CD14+_RO01746 blood
21 chr1:149900200-149900800 Flanking Active TSS H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
22 chr1:149900200-149900800 Flanking Active TSS HUES6 Cell Line embryonic stem cell
23 chr1:149900200-149900800 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
24 chr1:149900200-149900800 Flanking Active TSS Breast Myoepithelial Primary Cells Breast
25 chr1:149900200-149900800 Flanking Active TSS Primary T helper naive cells from peripheral blood blood
26 chr1:149900200-149900800 Flanking Active TSS Primary T helper cells PMA-I stimulated --
27 chr1:149900200-149900800 Flanking Active TSS Primary T cells effector/memory enriched fromperipheralblood blood
28 chr1:149900200-149900800 Flanking Active TSS Primary T killer memory cells from peripheral blood blood
29 chr1:149900200-149900800 Transcr. at gene 5' and 3' Foreskin Keratinocyte Primary Cells skin02 Skin
30 chr1:149900200-149900800 Flanking Active TSS Hela-S3 cervix
31 chr1:149900200-149900800 Flanking Active TSS K562 blood
32 chr1:149900200-149901000 Weak transcription Sigmoid Colon Sigmoid Colon
33 chr1:149900200-149901000 Flanking Active TSS Dnd41 blood
34 chr1:149900200-149901800 Enhancers Spleen Spleen
35 chr1:149900400-149900800 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
36 chr1:149900400-149900800 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
37 chr1:149900400-149900800 Flanking Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
38 chr1:149900400-149900800 Flanking Active TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
39 chr1:149900400-149900800 Flanking Active TSS iPS-15b Cell Line embryonic stem cell
40 chr1:149900400-149900800 Flanking Active TSS iPS-18 Cell Line embryonic stem cell
41 chr1:149900400-149900800 Flanking Active TSS iPS-20b Cell Line embryonic stem cell
42 chr1:149900400-149900800 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
43 chr1:149900400-149900800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
44 chr1:149900400-149900800 Flanking Active TSS Liver Liver
45 chr1:149900400-149900800 Flanking Active TSS Brain Germinal Matrix brain
46 chr1:149900400-149900800 Flanking Active TSS Fetal Heart heart
47 chr1:149900400-149900800 Enhancers Placenta Placenta
48 chr1:149900400-149900800 Enhancers Placenta Amnion Placenta Amnion
49 chr1:149900400-149900800 Transcr. at gene 5' and 3' Rectal Mucosa Donor 29 rectum
50 chr1:149900400-149900800 Flanking Active TSS GM12878-XiMat blood

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Last update: Aug 31, 2015