The 2.0 version of rSNPBase

Variant report

Variant rs12087578
Chromosome Location chr1:149984928-149984929
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:149982800-149994400 Weak transcription Gastric stomach
2 chr1:149983000-149985600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
3 chr1:149983000-149992800 Weak transcription Sigmoid Colon Sigmoid Colon
4 chr1:149983200-149985000 Enhancers Muscle Satellite Cultured Cells --
5 chr1:149983200-149985000 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
6 chr1:149983200-149985000 Enhancers Hela-S3 cervix
7 chr1:149983200-149985200 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
8 chr1:149983200-149985200 Enhancers Rectal Mucosa Donor 31 rectum
9 chr1:149983200-149985200 Enhancers Stomach Mucosa stomach
10 chr1:149983200-149985400 Enhancers HSMM muscle
11 chr1:149983200-149985600 Enhancers Fetal Intestine Small intestine
12 chr1:149983200-149987400 Weak transcription Placenta Amnion Placenta Amnion
13 chr1:149983200-149987600 Weak transcription Right Atrium heart
14 chr1:149983400-149985000 Enhancers K562 blood
15 chr1:149983400-149985000 Weak transcription NH-A brain
16 chr1:149983400-149985200 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
17 chr1:149983400-149985400 Enhancers Brain Angular Gyrus brain
18 chr1:149983400-149985400 Enhancers Brain Cingulate Gyrus brain
19 chr1:149983400-149985400 Enhancers Brain Inferior Temporal Lobe brain
20 chr1:149983400-149985400 Enhancers HepG2 liver
21 chr1:149983400-149987600 Weak transcription Breast Myoepithelial Primary Cells Breast
22 chr1:149983400-149988800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
23 chr1:149983400-149988800 Weak transcription iPS-15b Cell Line embryonic stem cell
24 chr1:149983400-149989000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
25 chr1:149983400-149989400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
26 chr1:149983400-149989400 Weak transcription Skeletal Muscle Female skeletal muscle
27 chr1:149983600-149985000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
28 chr1:149983600-149987600 Weak transcription A549 lung
29 chr1:149983800-149985200 Enhancers HSMMtube muscle
30 chr1:149984200-149985000 Enhancers Colonic Mucosa Colon
31 chr1:149984400-149985000 Enhancers Cortex derived primary cultured neurospheres brain
32 chr1:149984600-149985000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
33 chr1:149984600-149985000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
34 chr1:149984600-149985200 Enhancers Duodenum Mucosa Duodenum
35 chr1:149984600-149985400 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
36 chr1:149984600-149985400 Enhancers Fetal Intestine Large intestine
37 chr1:149984600-149987400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
38 chr1:149984800-149985000 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
39 chr1:149984800-149985000 Enhancers Liver Liver
40 chr1:149984800-149985200 Enhancers Adipose Nuclei Adipose
41 chr1:149984800-149985200 Active TSS Brain Anterior Caudate brain
42 chr1:149984800-149985200 Flanking Active TSS Brain Hippocampus Middle brain
43 chr1:149984800-149985200 Flanking Active TSS Brain Substantia Nigra brain
44 chr1:149984800-149985200 Enhancers GM12878-XiMat blood
45 chr1:149984800-149985400 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
46 chr1:149984800-149985400 Enhancers Rectal Mucosa Donor 29 rectum
47 chr1:149984800-149985400 Flanking Active TSS Osteobl bone

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Last update: Aug 31, 2015