Variant report

Variant	rs1105209
Chromosome Location	chr1:150152860-150152861
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:150136368..150139381-chr1:150151940..150156173,4	K562	blood:
2	chr1:149858090..149860586-chr1:150150146..150152929,2	MCF-7	breast:
3	chr1:150143512..150147427-chr1:150151082..150153697,4	K562	blood:
4	chr1:150149573..150151475-chr1:150151997..150154566,2	MCF-7	breast:
5	chr1:150138530..150142932-chr1:150151575..150154325,4	K562	blood:
6	chr1:150135482..150138288-chr1:150152643..150155510,2	MCF-7	breast:
7	chr1:150144058..150146059-chr1:150151380..150153165,2	MCF-7	breast:
8	chr1:150146767..150148436-chr1:150150182..150153003,2	MCF-7	breast:
9	chr1:150144466..150147427-chr1:150151082..150153149,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000184260	Chromatin interaction
ENSG00000178096	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000184270	Chromatin interaction

Extended variants
information (count: 240 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:238)

rs_ID	r²[population]
rs10494261	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10494264	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1050818	1.00[CHB][hapmap]
rs10749674	0.88[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10888568	1.00[ASN][1000 genomes]
rs10888569	0.81[EUR][1000 genomes]
rs11205307	1.00[ASN][1000 genomes]
rs11205308	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11205317	1.00[ASN][1000 genomes]
rs11205319	1.00[ASN][1000 genomes]
rs11205321	0.94[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11205326	0.94[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11205331	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11205333	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11205337	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11205361	1.00[ASN][1000 genomes]
rs11205362	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11548267	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11576289	1.00[ASN][1000 genomes]
rs11576293	1.00[ASN][1000 genomes]
rs11576997	1.00[ASN][1000 genomes]
rs11577346	0.94[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11578585	1.00[ASN][1000 genomes]
rs11579341	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11580234	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11580307	1.00[ASN][1000 genomes]
rs11582835	1.00[ASN][1000 genomes]
rs11583720	0.94[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11584070	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11584091	0.92[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11584354	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11584606	1.00[ASN][1000 genomes]
rs11584761	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11585955	0.94[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11586880	1.00[ASN][1000 genomes]
rs11587606	1.00[ASN][1000 genomes]
rs11587682	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11587837	1.00[ASN][1000 genomes]
rs11587963	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11588837	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11589585	1.00[ASN][1000 genomes]
rs11589801	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11589922	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11591200	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12058090	1.00[ASN][1000 genomes]
rs12058502	1.00[ASN][1000 genomes]
rs12060027	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12060211	1.00[ASN][1000 genomes]
rs12060830	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12061196	1.00[ASN][1000 genomes]
rs12061565	1.00[ASN][1000 genomes]
rs12061856	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12062861	1.00[ASN][1000 genomes]
rs12063059	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12063281	0.94[CEU][hapmap];1.00[ASN][1000 genomes]
rs12063329	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12065681	1.00[ASN][1000 genomes]
rs12066132	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12066293	1.00[ASN][1000 genomes]
rs12067422	0.93[CEU][hapmap];1.00[ASN][1000 genomes]
rs12073359	1.00[ASN][1000 genomes]
rs12074281	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12077623	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12081082	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12086155	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12087578	1.00[ASN][1000 genomes]
rs12093499	1.00[ASN][1000 genomes]
rs12098106	1.00[ASN][1000 genomes]
rs12120683	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12120867	1.00[ASN][1000 genomes]
rs12121966	1.00[CHB][hapmap]
rs12123044	1.00[ASN][1000 genomes]
rs12124898	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12126312	1.00[ASN][1000 genomes]
rs12126958	1.00[CHB][hapmap]
rs12128385	1.00[ASN][1000 genomes]
rs12138231	1.00[ASN][1000 genomes]
rs12138787	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12139286	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12142178	1.00[ASN][1000 genomes]
rs12142331	1.00[ASN][1000 genomes]
rs12145630	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1339494	1.00[ASN][1000 genomes]
rs1339495	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1382573	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1545762	0.94[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16833149	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16835254	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16835780	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16836143	1.00[CHB][hapmap]
rs1824848	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1824849	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1824850	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1964542	0.88[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1975957	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2027349	0.94[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2039800	0.94[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2044891	1.00[ASN][1000 genomes]
rs2133128	1.00[ASN][1000 genomes]
rs2198194	1.00[ASN][1000 genomes]
rs2279171	1.00[CHB][hapmap]
rs2318763	0.94[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2319280	1.00[ASN][1000 genomes]
rs28366567	1.00[ASN][1000 genomes]
rs28443768	1.00[ASN][1000 genomes]
rs28560019	1.00[ASN][1000 genomes]
rs28560140	1.00[ASN][1000 genomes]
rs28660389	1.00[ASN][1000 genomes]
rs28753817	1.00[ASN][1000 genomes]
rs3118119	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3208509	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34755378	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs35230744	1.00[ASN][1000 genomes]
rs3850838	0.94[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3850841	1.00[CHB][hapmap]
rs3925724	0.94[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4058847	0.94[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41300865	1.00[ASN][1000 genomes]
rs4926391	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4926406	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs4926407	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4926408	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4926409	0.94[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs4926411	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4926412	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55633125	1.00[ASN][1000 genomes]
rs55647342	1.00[ASN][1000 genomes]
rs55802315	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55840680	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55840906	1.00[ASN][1000 genomes]
rs55909733	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55918911	1.00[ASN][1000 genomes]
rs55963510	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55973252	1.00[ASN][1000 genomes]
rs56125600	1.00[ASN][1000 genomes]
rs56133109	1.00[ASN][1000 genomes]
rs56188926	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56212907	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56305459	1.00[ASN][1000 genomes]
rs56349882	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56369603	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56892994	1.00[ASN][1000 genomes]
rs57926929	0.81[EUR][1000 genomes]
rs58395667	1.00[ASN][1000 genomes]
rs58426216	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59054339	1.00[ASN][1000 genomes]
rs59607464	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6657062	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66649150	1.00[ASN][1000 genomes]
rs6666959	0.94[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6687454	1.00[ASN][1000 genomes]
rs6694729	0.85[EUR][1000 genomes]
rs67450539	1.00[ASN][1000 genomes]
rs67880399	1.00[ASN][1000 genomes]
rs72692834	1.00[ASN][1000 genomes]
rs72692835	1.00[ASN][1000 genomes]
rs72692837	1.00[ASN][1000 genomes]
rs72692840	1.00[ASN][1000 genomes]
rs72692842	1.00[ASN][1000 genomes]
rs72692843	1.00[ASN][1000 genomes]
rs72692849	1.00[ASN][1000 genomes]
rs72692851	1.00[ASN][1000 genomes]
rs72692854	1.00[ASN][1000 genomes]
rs72692857	1.00[ASN][1000 genomes]
rs72692861	1.00[ASN][1000 genomes]
rs72692862	1.00[ASN][1000 genomes]
rs72692865	1.00[ASN][1000 genomes]
rs72692866	1.00[ASN][1000 genomes]
rs72692869	1.00[ASN][1000 genomes]
rs72692886	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692893	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692895	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692896	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692897	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692898	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692899	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692900	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692901	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694905	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694906	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694908	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694914	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694915	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694917	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694918	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694919	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694923	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694926	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694927	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694928	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694933	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694936	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694942	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694943	0.84[EUR][1000 genomes]
rs72694944	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694945	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694946	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694950	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694951	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694953	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694954	0.86[EUR][1000 genomes]
rs72694956	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694957	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694959	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694960	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694961	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694962	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694964	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694965	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694969	1.00[ASN][1000 genomes]
rs72694974	1.00[ASN][1000 genomes]
rs72694990	1.00[ASN][1000 genomes]
rs72694993	1.00[ASN][1000 genomes]
rs72696807	1.00[ASN][1000 genomes]
rs72696808	1.00[ASN][1000 genomes]
rs72696824	1.00[ASN][1000 genomes]
rs72696828	1.00[ASN][1000 genomes]
rs72696841	1.00[ASN][1000 genomes]
rs72696848	1.00[ASN][1000 genomes]
rs72696852	1.00[ASN][1000 genomes]
rs72696859	1.00[ASN][1000 genomes]
rs73008195	1.00[ASN][1000 genomes]
rs7518179	0.85[AFR][1000 genomes]
rs7519918	1.00[ASN][1000 genomes]
rs7520930	0.94[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7521768	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7521783	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7530922	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7532876	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7540847	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7544145	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7550323	0.94[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7550350	1.00[CHB][hapmap]
rs7553622	0.94[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7554367	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7555080	0.83[EUR][1000 genomes]
rs942453	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9662055	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv535153	chr1:150147218-150168829	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150138400-150157800	Weak transcription	Small Intestine	intestine
2	chr1:150141600-150158600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr1:150145400-150153000	Weak transcription	Brain Substantia Nigra	brain
4	chr1:150145800-150160000	Weak transcription	Right Atrium	heart
5	chr1:150146000-150159200	Weak transcription	HSMMtube	muscle
6	chr1:150146200-150153400	Weak transcription	Brain Anterior Caudate	brain
7	chr1:150147200-150159000	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr1:150150000-150155800	Weak transcription	Placenta	Placenta
9	chr1:150151000-150159200	Weak transcription	Adipose Nuclei	Adipose
10	chr1:150151200-150153400	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr1:150151800-150155000	Weak transcription	Primary B cells from cord blood	blood
12	chr1:150152200-150153200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr1:150152400-150153000	Enhancers	Primary hematopoietic stem cells	blood
14	chr1:150152600-150153200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr1:150152600-150153400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr1:150152600-150154000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr1:150152800-150153400	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr1:150152800-150154000	Enhancers	Cortex derived primary cultured neurospheres	brain

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