Variant report

Variant	rs7530922
Chromosome Location	chr1:150023407-150023408
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:149875657..149877242-chr1:150022210..150023854,2	K562	blood:
2	chr1:150017927..150020825-chr1:150022056..150024781,3	MCF-7	breast:
3	chr1:149858084..149861835-chr1:150019287..150023815,6	K562	blood:
4	chr1:150023241..150025135-chr1:150032252..150034875,2	K562	blood:
5	chr1:149933269..149934631-chr1:150022302..150023872,9	MCF-7	breast:
6	chr1:149856755..149861735-chr1:150014773..150024288,21	MCF-7	breast:
7	chr1:150020211..150024864-chr1:150037839..150041365,4	MCF-7	breast:
8	chr1:150020045..150025053-chr1:150028781..150033753,5	MCF-7	breast:
9	chr1:149911189..149913982-chr1:150022742..150024271,2	MCF-7	breast:
10	chr1:149949620..149952507-chr1:150022418..150024343,2	MCF-7	breast:
11	chr1:149858368..149864477-chr1:150018495..150024155,9	K562	blood:
12	chr1:149855348..149862315-chr1:150015478..150024375,18	MCF-7	breast:
13	chr1:150022553..150024320-chr1:150157694..150159816,2	K562	blood:
14	chr1:149993776..149995889-chr1:150021300..150024191,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000178096	Chromatin interaction
ENSG00000136631	Chromatin interaction
ENSG00000184270	Chromatin interaction
ENSG00000184260	Chromatin interaction
ENSG00000184678	Chromatin interaction

Extended variants
information (count: 234 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:231)

rs_ID	r²[population]
rs10494261	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10494264	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10494363	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10749674	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10888568	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10888569	0.96[EUR][1000 genomes]
rs10888572	0.82[EUR][1000 genomes]
rs1105209	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11205307	1.00[ASN][1000 genomes]
rs11205308	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11205316	0.87[EUR][1000 genomes]
rs11205317	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11205319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11205321	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11205326	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11205329	0.83[EUR][1000 genomes]
rs11205331	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11205333	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11548267	1.00[ASN][1000 genomes]
rs11576997	1.00[ASN][1000 genomes]
rs11577346	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11580307	1.00[ASN][1000 genomes]
rs11583720	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11584091	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11584354	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11584606	1.00[ASN][1000 genomes]
rs11584761	1.00[ASN][1000 genomes]
rs11585955	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11587963	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11588837	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11589585	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11589801	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11589922	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11591200	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12058090	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12058502	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12060027	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12060211	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12060830	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12061167	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12061196	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12061565	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12061856	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.97[TSI][hapmap];0.91[YRI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12062861	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12063059	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12063281	1.00[CEU][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12063329	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12064532	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12065681	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12066132	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12066293	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12067422	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12073359	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12074281	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12077623	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12078573	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12081082	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12086155	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12087578	1.00[ASN][1000 genomes]
rs12093499	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12098106	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12124898	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12138231	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12138787	1.00[ASN][1000 genomes]
rs12139248	0.80[EUR][1000 genomes]
rs1339494	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1339495	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1382573	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1545762	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16833149	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16835254	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16836630	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17581380	1.00[CHB][hapmap]
rs17643644	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1804775	1.00[ASN][1000 genomes]
rs1824848	0.82[EUR][1000 genomes]
rs1824849	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1824850	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1964542	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.94[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1975957	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2027349	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2039800	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2044891	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2169895	0.92[EUR][1000 genomes]
rs2198194	1.00[ASN][1000 genomes]
rs2279171	1.00[CHB][hapmap]
rs2318763	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2319280	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28366567	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28443768	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28560140	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28660389	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28753817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3118119	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs3208509	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34755378	1.00[ASN][1000 genomes]
rs35230744	1.00[ASN][1000 genomes]
rs3850838	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3925724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4058847	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41264630	1.00[ASN][1000 genomes]
rs41265185	1.00[ASN][1000 genomes]
rs41302101	1.00[ASN][1000 genomes]
rs45548131	1.00[ASN][1000 genomes]
rs4926388	0.82[EUR][1000 genomes]
rs4926391	0.82[EUR][1000 genomes]
rs4926406	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs4926407	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4926408	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4926409	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs4926411	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4926412	0.94[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55633125	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55647342	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55705001	1.00[ASN][1000 genomes]
rs55802315	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55840680	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55840906	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55909733	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55918911	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55963510	1.00[ASN][1000 genomes]
rs56125600	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56133109	1.00[ASN][1000 genomes]
rs56188926	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56212907	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56265028	1.00[ASN][1000 genomes]
rs56305459	1.00[ASN][1000 genomes]
rs56349882	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56369603	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56794080	0.80[AFR][1000 genomes]
rs56892994	1.00[ASN][1000 genomes]
rs57926929	0.91[EUR][1000 genomes]
rs58395667	1.00[ASN][1000 genomes]
rs58426216	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59054339	1.00[ASN][1000 genomes]
rs59607464	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6657062	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66649150	1.00[ASN][1000 genomes]
rs6666959	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6687454	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6694729	0.89[EUR][1000 genomes]
rs67450539	1.00[ASN][1000 genomes]
rs67880399	1.00[ASN][1000 genomes]
rs68144650	1.00[ASN][1000 genomes]
rs72692803	1.00[ASN][1000 genomes]
rs72692804	1.00[ASN][1000 genomes]
rs72692805	1.00[ASN][1000 genomes]
rs72692807	1.00[ASN][1000 genomes]
rs72692808	1.00[ASN][1000 genomes]
rs72692810	1.00[ASN][1000 genomes]
rs72692811	1.00[ASN][1000 genomes]
rs72692812	1.00[ASN][1000 genomes]
rs72692813	1.00[ASN][1000 genomes]
rs72692814	1.00[ASN][1000 genomes]
rs72692816	1.00[ASN][1000 genomes]
rs72692818	1.00[ASN][1000 genomes]
rs72692819	1.00[ASN][1000 genomes]
rs72692834	1.00[ASN][1000 genomes]
rs72692835	1.00[ASN][1000 genomes]
rs72692837	1.00[ASN][1000 genomes]
rs72692840	1.00[ASN][1000 genomes]
rs72692842	1.00[ASN][1000 genomes]
rs72692843	1.00[ASN][1000 genomes]
rs72692849	1.00[ASN][1000 genomes]
rs72692851	1.00[ASN][1000 genomes]
rs72692854	1.00[ASN][1000 genomes]
rs72692857	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692861	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692862	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692866	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692869	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692886	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692893	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692895	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692896	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692897	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692898	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692899	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692900	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72692901	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694905	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694906	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694908	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694914	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694915	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694917	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694918	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694919	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694923	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694926	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694927	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694928	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694933	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694936	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694942	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694943	0.89[EUR][1000 genomes]
rs72694944	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694945	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694946	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694950	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694951	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694953	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694954	0.89[EUR][1000 genomes]
rs72694956	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694957	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694959	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694960	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694961	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694962	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694964	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694965	1.00[ASN][1000 genomes]
rs72694969	1.00[ASN][1000 genomes]
rs72694974	1.00[ASN][1000 genomes]
rs72694990	1.00[ASN][1000 genomes]
rs72694993	1.00[ASN][1000 genomes]
rs72708162	1.00[ASN][1000 genomes]
rs73008195	1.00[ASN][1000 genomes]
rs7519918	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7520930	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7521768	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7521783	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7532876	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7540847	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7544531	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7550323	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7550350	1.00[CHB][hapmap];0.93[EUR][1000 genomes]
rs7553622	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7554367	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7555080	0.90[EUR][1000 genomes]
rs9662055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831537	chr1:149833357-150064655	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	431 gene(s)	inside rSNPs	diseases
2	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
3	nsv947321	chr1:150007387-150030042	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs7530922	CTSS	cis	cerebellum	SCAN
rs7530922	LENG1	trans	brain	seeQTL
rs7530922	POLR3GL	cis	cerebellum	SCAN
rs7530922	C1orf54	cis	lymphoblastoid	seeQTL
rs7530922	PLEKHO1	cis	cerebellum	SCAN
rs7530922	LIX1L	cis	cerebellum	SCAN
rs7530922	SCNM1	cis	cerebellum	SCAN
rs7530922	CTSK	cis	cerebellum	SCAN

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:149996600-150037000	Weak transcription	Left Ventricle	heart
2	chr1:150016800-150024000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr1:150017600-150026200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr1:150017600-150037600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr1:150017800-150025800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:150017800-150026000	Weak transcription	Osteobl	bone
7	chr1:150018000-150031600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr1:150018000-150033400	Weak transcription	Fetal Stomach	stomach
9	chr1:150018200-150038600	Weak transcription	Fetal Muscle Trunk	muscle
10	chr1:150018400-150024000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr1:150022200-150025800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr1:150022800-150025800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:150022800-150025800	Weak transcription	GM12878-XiMat	blood
14	chr1:150022800-150032400	Weak transcription	Fetal Intestine Small	intestine
15	chr1:150022800-150037200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr1:150022800-150038600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr1:150023000-150024000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr1:150023000-150025800	Weak transcription	Adipose Nuclei	Adipose
19	chr1:150023000-150026000	Weak transcription	Brain Anterior Caudate	brain
20	chr1:150023000-150028600	Weak transcription	Primary B cells from cord blood	blood
21	chr1:150023000-150033600	Weak transcription	Colon Smooth Muscle	Colon
22	chr1:150023400-150023800	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr1:150023400-150023800	Weak transcription	A549	lung
24	chr1:150023400-150024200	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr1:150023400-150025400	Weak transcription	Monocytes-CD14+_RO01746	blood

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