The 2.0 version of rSNPBase

Variant report

Variant rs12078573
Chromosome Location chr1:149903609-149903610
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:84 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:149900000-149903800 Flanking Active TSS Primary monocytes fromperipheralblood blood
2 chr1:149900000-149904400 Flanking Active TSS Monocytes-CD14+_RO01746 blood
3 chr1:149900400-149903800 Weak transcription Gastric stomach
4 chr1:149900400-149906400 Genic enhancers Fetal Intestine Small intestine
5 chr1:149900400-149907800 Weak transcription Esophagus oesophagus
6 chr1:149900400-149907800 Weak transcription Pancreas Pancrea
7 chr1:149900400-149908400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr1:149900600-149903800 Genic enhancers Fetal Muscle Leg muscle
9 chr1:149900600-149906200 Genic enhancers Fetal Intestine Large intestine
10 chr1:149900600-149906200 Weak transcription Left Ventricle heart
11 chr1:149900600-149907600 Weak transcription Fetal Brain Male brain
12 chr1:149900600-149907800 Weak transcription Pancreatic Islets Pancreatic Islet
13 chr1:149900600-149908200 Weak transcription Right Ventricle heart
14 chr1:149900600-149908400 Weak transcription H9 Cell Line embryonic stem cell
15 chr1:149900800-149904000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
16 chr1:149900800-149904000 Strong transcription A549 lung
17 chr1:149900800-149905600 Weak transcription Brain Substantia Nigra brain
18 chr1:149900800-149905600 Strong transcription Duodenum Smooth Muscle Duodenum
19 chr1:149900800-149905800 Weak transcription Skeletal Muscle Male skeletal muscle
20 chr1:149900800-149905800 Weak transcription Skeletal Muscle Female skeletal muscle
21 chr1:149900800-149906400 Weak transcription Adipose Nuclei Adipose
22 chr1:149900800-149907200 Weak transcription HepG2 liver
23 chr1:149900800-149907600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
24 chr1:149900800-149907600 Weak transcription Liver Liver
25 chr1:149900800-149907800 Weak transcription Brain Germinal Matrix brain
26 chr1:149900800-149907800 Weak transcription HSMM muscle
27 chr1:149900800-149908000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
28 chr1:149900800-149908200 Weak transcription HUES6 Cell Line embryonic stem cell
29 chr1:149901000-149904000 Strong transcription Colon Smooth Muscle Colon
30 chr1:149901000-149904000 Strong transcription Fetal Lung lung
31 chr1:149901000-149906000 Strong transcription Breast Myoepithelial Primary Cells Breast
32 chr1:149901000-149906000 Weak transcription Small Intestine intestine
33 chr1:149901000-149906000 Strong transcription Stomach Smooth Muscle stomach
34 chr1:149901000-149906200 Strong transcription Placenta Placenta
35 chr1:149901000-149906600 Strong transcription Cortex derived primary cultured neurospheres brain
36 chr1:149901000-149907800 Weak transcription Brain Angular Gyrus brain
37 chr1:149901200-149904200 Genic enhancers Fetal Adrenal Gland Adrenal Gland
38 chr1:149901200-149904200 Strong transcription NHLF lung
39 chr1:149901200-149904600 Strong transcription Placenta Amnion Placenta Amnion
40 chr1:149901200-149909000 Weak transcription GM12878-XiMat blood
41 chr1:149901400-149904200 Strong transcription Aorta Aorta
42 chr1:149901400-149904400 Strong transcription Osteobl bone
43 chr1:149901400-149906200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
44 chr1:149901400-149906200 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
45 chr1:149901600-149904200 Strong transcription Brain Dorsolateral Prefrontal Cortex brain
46 chr1:149901600-149906200 Strong transcription Ovary ovary
47 chr1:149901600-149906400 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
48 chr1:149901600-149907400 Weak transcription Stomach Mucosa stomach
49 chr1:149901600-149908200 Weak transcription Fetal Thymus thymus
50 chr1:149901800-149905400 Weak transcription Spleen Spleen

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Last update: Aug 31, 2015