The 2.0 version of rSNPBase

Variant report

Variant rs3850838
Chromosome Location chr1:150065378-150065379
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:122 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:150040200-150090800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr1:150040400-150078800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr1:150040400-150082800 Weak transcription Small Intestine intestine
4 chr1:150040400-150086800 Weak transcription Esophagus oesophagus
5 chr1:150040400-150121400 Weak transcription Pancreas Pancrea
6 chr1:150040600-150072200 Weak transcription ES-WA7 Cell Line embryonic stem cell
7 chr1:150040600-150092000 Weak transcription ES-I3 Cell Line embryonic stem cell
8 chr1:150041000-150114400 Weak transcription Right Ventricle heart
9 chr1:150041400-150066000 Weak transcription Pancreatic Islets Pancreatic Islet
10 chr1:150041400-150067800 Weak transcription H9 Cell Line embryonic stem cell
11 chr1:150041400-150069200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
12 chr1:150042200-150073400 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
13 chr1:150042200-150086600 Weak transcription Gastric stomach
14 chr1:150042400-150067600 Weak transcription Psoas Muscle Psoas
15 chr1:150042600-150090800 Weak transcription Stomach Mucosa stomach
16 chr1:150048400-150068400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
17 chr1:150050200-150065600 Weak transcription Fetal Brain Male brain
18 chr1:150050600-150067200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
19 chr1:150050600-150084800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
20 chr1:150051200-150065400 Weak transcription Rectal Smooth Muscle rectum
21 chr1:150051600-150065400 Weak transcription HSMMtube muscle
22 chr1:150052000-150071400 Weak transcription Fetal Intestine Small intestine
23 chr1:150052000-150116800 Weak transcription Spleen Spleen
24 chr1:150055000-150086200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
25 chr1:150055000-150100600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
26 chr1:150055000-150120800 Weak transcription Aorta Aorta
27 chr1:150055200-150065600 Weak transcription Colonic Mucosa Colon
28 chr1:150055200-150069600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
29 chr1:150055200-150078400 Weak transcription Thymus Thymus
30 chr1:150055200-150096000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
31 chr1:150055200-150104800 Weak transcription Brain Cingulate Gyrus brain
32 chr1:150055400-150065600 Weak transcription Hela-S3 cervix
33 chr1:150055400-150067200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
34 chr1:150055600-150065600 Weak transcription Skeletal Muscle Male skeletal muscle
35 chr1:150055600-150076400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
36 chr1:150056000-150072200 Weak transcription Primary hematopoietic stem cells short term culture blood
37 chr1:150056200-150065600 Weak transcription Brain Angular Gyrus brain
38 chr1:150056200-150074200 Weak transcription Lung lung
39 chr1:150056200-150081800 Weak transcription Brain Substantia Nigra brain
40 chr1:150056600-150065400 Weak transcription Colon Smooth Muscle Colon
41 chr1:150056600-150073400 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
42 chr1:150056600-150086400 Weak transcription H1 Cell Line embryonic stem cell
43 chr1:150056800-150073400 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
44 chr1:150057000-150065600 Weak transcription Brain Anterior Caudate brain
45 chr1:150057000-150065600 Weak transcription Duodenum Smooth Muscle Duodenum
46 chr1:150057000-150068000 Weak transcription K562 blood
47 chr1:150057000-150084800 Weak transcription A549 lung
48 chr1:150057800-150065400 Weak transcription Cortex derived primary cultured neurospheres brain
49 chr1:150058000-150065600 Weak transcription iPS-18 Cell Line embryonic stem cell
50 chr1:150058200-150065600 Weak transcription Fetal Brain Female brain

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Last update: Aug 31, 2015