The 2.0 version of rSNPBase

Variant report

Variant rs12077623
Chromosome Location chr1:149970096-149970097
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:118 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:149948200-149973000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
2 chr1:149948200-149977400 Weak transcription Fetal Muscle Trunk muscle
3 chr1:149948200-149981000 Weak transcription Primary T cells fromperipheralblood blood
4 chr1:149948400-149971600 Weak transcription Fetal Brain Male brain
5 chr1:149948400-149981400 Weak transcription Esophagus oesophagus
6 chr1:149949400-149975400 Weak transcription Placenta Placenta
7 chr1:149949600-149974400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
8 chr1:149952200-149980800 Weak transcription Primary T regulatory cells fromperipheralblood blood
9 chr1:149953000-149978800 Weak transcription Pancreas Pancrea
10 chr1:149957800-149978600 Weak transcription Spleen Spleen
11 chr1:149958200-149972000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
12 chr1:149958800-149973400 Weak transcription Aorta Aorta
13 chr1:149959400-149975800 Weak transcription Fetal Kidney kidney
14 chr1:149959600-149975400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
15 chr1:149960000-149975400 Weak transcription Hela-S3 cervix
16 chr1:149964600-149972000 Enhancers Brain Hippocampus Middle brain
17 chr1:149965000-149972400 Enhancers Brain Angular Gyrus brain
18 chr1:149965000-149978400 Genic enhancers Foreskin Melanocyte Primary Cells skin03 Skin
19 chr1:149965000-149981400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
20 chr1:149965200-149972200 Weak transcription Fetal Intestine Small intestine
21 chr1:149965200-149976000 Weak transcription Lung lung
22 chr1:149965400-149971400 Weak transcription Fetal Stomach stomach
23 chr1:149965400-149975600 Weak transcription Sigmoid Colon Sigmoid Colon
24 chr1:149966200-149973200 Weak transcription Cortex derived primary cultured neurospheres brain
25 chr1:149966200-149974400 Weak transcription Brain Germinal Matrix brain
26 chr1:149966400-149971800 Enhancers Skeletal Muscle Male skeletal muscle
27 chr1:149967000-149971600 Enhancers Colon Smooth Muscle Colon
28 chr1:149967000-149971800 Enhancers Skeletal Muscle Female skeletal muscle
29 chr1:149967000-149972000 Enhancers Brain Substantia Nigra brain
30 chr1:149967200-149970400 Enhancers Primary T helper cells PMA-I stimulated --
31 chr1:149967400-149978600 Weak transcription Gastric stomach
32 chr1:149967600-149970600 Flanking Active TSS GM12878-XiMat blood
33 chr1:149967600-149971400 Enhancers Brain Anterior Caudate brain
34 chr1:149967600-149971400 Weak transcription Left Ventricle heart
35 chr1:149967800-149970200 Genic enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
36 chr1:149967800-149972000 Enhancers Fetal Heart heart
37 chr1:149967800-149981200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
38 chr1:149968000-149970800 Enhancers Primary B cells from peripheral blood blood
39 chr1:149968000-149972800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
40 chr1:149968200-149971400 Weak transcription Fetal Adrenal Gland Adrenal Gland
41 chr1:149968200-149973200 Weak transcription Right Atrium heart
42 chr1:149968200-149980800 Weak transcription H9 Cell Line embryonic stem cell
43 chr1:149968400-149970200 Enhancers ES-I3 Cell Line embryonic stem cell
44 chr1:149968400-149971600 Genic enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
45 chr1:149968400-149971600 Enhancers Stomach Mucosa stomach
46 chr1:149968400-149972000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
47 chr1:149968400-149972000 Strong transcription NHDF-Ad bronchial
48 chr1:149968400-149972800 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
49 chr1:149968400-149973600 Weak transcription A549 lung
50 chr1:149968400-149980800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015