Variant report

Variant	rs11579087
Chromosome Location	chr1:150221653-150221654
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:150207098..150210180-chr1:150219396..150222236,3	K562	blood:
2	chr1:150216343..150219723-chr1:150220885..150222884,3	K562	blood:
3	chr1:150208523..150211890-chr1:150220094..150224836,4	MCF-7	breast:
4	chr1:150221374..150224250-chr1:150227593..150230126,3	MCF-7	breast:
5	chr1:150206777..150208598-chr1:150220736..150222854,2	K562	blood:
6	chr1:150220829..150222405-chr1:150253566..150255436,2	MCF-7	breast:
7	chr1:150211638..150214973-chr1:150221344..150224358,4	MCF-7	breast:
8	chr1:150208680..150211856-chr1:150219396..150224319,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000143401	Chromatin interaction
ENSG00000159208	Chromatin interaction
ENSG00000222222	Chromatin interaction
ENSG00000271845	Chromatin interaction
ENSG00000118298	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11205360	0.85[EUR][1000 genomes]
rs11205361	0.86[EUR][1000 genomes]
rs11205362	0.84[EUR][1000 genomes]
rs11548267	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11576289	0.80[EUR][1000 genomes]
rs11576293	0.80[EUR][1000 genomes]
rs11576997	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11580234	0.88[EUR][1000 genomes]
rs11580307	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11584070	0.84[EUR][1000 genomes]
rs11584761	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11587606	0.84[EUR][1000 genomes]
rs11587682	0.84[EUR][1000 genomes]
rs11587837	0.84[EUR][1000 genomes]
rs11588837	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12086155	0.83[EUR][1000 genomes]
rs12120683	0.88[EUR][1000 genomes]
rs12138787	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12139286	0.86[EUR][1000 genomes]
rs12142178	0.90[EUR][1000 genomes]
rs12142331	0.82[EUR][1000 genomes]
rs12144315	0.87[EUR][1000 genomes]
rs12145630	0.87[EUR][1000 genomes]
rs16835254	0.83[EUR][1000 genomes]
rs16835780	0.86[EUR][1000 genomes]
rs28560019	0.84[EUR][1000 genomes]
rs34755378	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs41300865	0.84[EUR][1000 genomes]
rs55973252	0.84[EUR][1000 genomes]
rs56133109	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56305459	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56892994	0.83[EUR][1000 genomes]
rs58395667	0.84[EUR][1000 genomes]
rs66649150	0.83[EUR][1000 genomes]
rs67880399	0.83[EUR][1000 genomes]
rs72694969	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72694972	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72694974	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72694990	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72694993	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72696807	0.88[EUR][1000 genomes]
rs72696808	0.88[EUR][1000 genomes]
rs72696824	0.84[EUR][1000 genomes]
rs72696828	0.84[EUR][1000 genomes]
rs72696841	0.80[EUR][1000 genomes]
rs942453	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv916014	chr1:150187139-150537483	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
3	nsv872415	chr1:150210538-150248046	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1009508	chr1:150211112-150270830	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv535154	chr1:150214907-150265508	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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