Variant report

Variant	rs11205367
Chromosome Location	chr1:150384458-150384459
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:150335233..150338646-chr1:150379977..150384917,4	MCF-7	breast:
2	chr1:150383624..150385632-chr1:150532921..150535536,2	MCF-7	breast:
3	chr1:150383339..150385133-chr1:150386367..150388485,2	MCF-7	breast:
4	chr1:150381392..150382913-chr1:150383316..150384880,2	K562	blood:
5	chr1:150334661..150338872-chr1:150379839..150385041,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163125	Chromatin interaction
ENSG00000203804	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs11204665	1.00[AFR][1000 genomes]
rs11205360	0.81[EUR][1000 genomes]
rs11205361	0.86[EUR][1000 genomes]
rs11205362	0.88[EUR][1000 genomes]
rs11205374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11205377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11205386	0.81[EUR][1000 genomes]
rs11576289	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs11576293	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs11577751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11578585	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11579341	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11580234	0.84[EUR][1000 genomes]
rs11580764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11582835	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11584070	0.88[EUR][1000 genomes]
rs11584761	0.81[EUR][1000 genomes]
rs11586880	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11587606	0.88[EUR][1000 genomes]
rs11587682	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11587837	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11588221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12119320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12120428	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12120683	0.84[EUR][1000 genomes]
rs12120867	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12123044	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12126312	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12128385	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12132918	1.00[AFR][1000 genomes]
rs12134682	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12138453	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12138787	0.81[EUR][1000 genomes]
rs12139286	0.81[EUR][1000 genomes]
rs12142178	0.81[EUR][1000 genomes]
rs12142331	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs12142874	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12144315	0.83[EUR][1000 genomes]
rs12144958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12145630	0.82[EUR][1000 genomes]
rs16835780	0.81[EUR][1000 genomes]
rs2133128	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28560019	0.88[EUR][1000 genomes]
rs34848955	1.00[AFR][1000 genomes]
rs41264469	1.00[AFR][1000 genomes]
rs41273537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs41300865	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs4265470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55973252	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs56133109	0.81[EUR][1000 genomes]
rs72696807	0.84[EUR][1000 genomes]
rs72696808	0.84[EUR][1000 genomes]
rs72696824	0.88[EUR][1000 genomes]
rs72696828	0.88[EUR][1000 genomes]
rs72696841	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs72696848	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72696852	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72696855	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72696859	1.00[EUR][1000 genomes]
rs72696873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72696880	1.00[AFR][1000 genomes]
rs72696901	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72698822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72698842	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72698892	1.00[AFR][1000 genomes]
rs72700804	1.00[AFR][1000 genomes]
rs72700810	1.00[AFR][1000 genomes]
rs72700813	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916014	chr1:150187139-150537483	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150338400-150405200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:150339400-150390600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr1:150339800-150390000	Weak transcription	Thymus	Thymus
4	chr1:150340000-150416800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:150347000-150392400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr1:150348000-150390400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr1:150359200-150392000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr1:150360000-150385000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr1:150360000-150385200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr1:150360000-150389600	Weak transcription	Dnd41	blood
11	chr1:150360000-150390800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr1:150360800-150387800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr1:150362400-150389600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr1:150362600-150416600	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr1:150370000-150407800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr1:150372200-150393200	Weak transcription	Stomach Smooth Muscle	stomach
17	chr1:150373200-150389400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr1:150373200-150389800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr1:150373200-150390800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr1:150373200-150390800	Weak transcription	Fetal Lung	lung
21	chr1:150373200-150390800	Weak transcription	Fetal Muscle Leg	muscle
22	chr1:150373200-150442800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr1:150373400-150390600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr1:150373400-150390600	Weak transcription	Fetal Stomach	stomach
25	chr1:150373800-150389400	Weak transcription	Fetal Thymus	thymus
26	chr1:150376200-150389800	Weak transcription	Primary T cells from cord blood	blood
27	chr1:150378800-150386800	Weak transcription	Fetal Heart	heart
28	chr1:150378800-150395200	Weak transcription	Hela-S3	cervix
29	chr1:150379000-150390600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr1:150379200-150386600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr1:150379200-150386600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr1:150379200-150391200	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr1:150379400-150387800	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr1:150379400-150390000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr1:150379400-150392400	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr1:150379800-150388000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr1:150380200-150394800	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr1:150380600-150429800	Weak transcription	Aorta	Aorta
39	chr1:150381000-150388000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr1:150381200-150414400	Weak transcription	Fetal Brain Female	brain
41	chr1:150381400-150386000	Enhancers	Primary neutrophils fromperipheralblood	blood
42	chr1:150381600-150384600	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr1:150381600-150386600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr1:150381600-150391000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr1:150381800-150385200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr1:150381800-150389400	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr1:150381800-150393200	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr1:150381800-150398400	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr1:150381800-150401200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr1:150381800-150417400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links