Variant report

Variant	rs58355576
Chromosome Location	chr12:118409251-118409252
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs5745809	1.00[AMR][1000 genomes]
rs59158052	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59323695	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60856947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61091236	1.00[AMR][1000 genomes]
rs73406687	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406688	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73408410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73408439	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560388	chr12:118391600-118482352	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118407800-118410200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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