Variant report

Variant	rs61091236
Chromosome Location	chr12:118496965-118496966
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:118496924..118498642-chr12:118498871..118500606,2	MCF-7	breast:
2	chr12:118478007..118480005-chr12:118496581..118498795,2	K562	blood:
3	chr12:118450883..118457954-chr12:118495063..118502199,13	K562	blood:
4	chr12:118496436..118502396-chr12:118572063..118576805,10	MCF-7	breast:
5	chr12:118476730..118480005-chr12:118496581..118498795,3	K562	blood:

Variant related genes	Relation type
ENSG00000176871	Chromatin interaction
ENSG00000176834	Chromatin interaction
ENSG00000111445	Chromatin interaction
ENSG00000089220	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs34253698	0.90[AFR][1000 genomes]
rs5745809	1.00[AMR][1000 genomes]
rs58355576	1.00[AMR][1000 genomes]
rs58958096	0.85[AFR][1000 genomes]
rs59158052	1.00[AMR][1000 genomes]
rs59323695	1.00[AMR][1000 genomes]
rs60129426	0.90[AFR][1000 genomes]
rs60856947	1.00[AMR][1000 genomes]
rs73406687	1.00[AMR][1000 genomes]
rs73406688	1.00[AMR][1000 genomes]
rs73406701	1.00[AMR][1000 genomes]
rs73408410	1.00[AMR][1000 genomes]
rs73408439	1.00[AMR][1000 genomes]
rs73410742	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795965	chr12:118463329-118504859	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1053785	chr12:118490955-118874194	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118455200-118497400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr12:118476400-118497600	Weak transcription	Fetal Brain Male	brain
3	chr12:118477000-118497600	Weak transcription	Primary B cells from cord blood	blood
4	chr12:118480800-118497200	Weak transcription	Fetal Kidney	kidney
5	chr12:118481000-118498200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr12:118481200-118497600	Weak transcription	Fetal Thymus	thymus
7	chr12:118481400-118497800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr12:118482600-118497600	Weak transcription	Primary B cells from peripheral blood	blood
9	chr12:118482600-118497600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr12:118482800-118497200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr12:118489400-118497200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr12:118489600-118497200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr12:118490400-118497400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr12:118490400-118497400	Enhancers	Liver	Liver
15	chr12:118490600-118497200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr12:118490600-118497200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr12:118490600-118497200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr12:118490600-118497400	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr12:118490800-118497400	Weak transcription	Primary T cells from cord blood	blood
20	chr12:118490800-118497800	Weak transcription	Thymus	Thymus
21	chr12:118491000-118497200	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr12:118491000-118497200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr12:118491000-118497200	Weak transcription	Brain Germinal Matrix	brain
24	chr12:118491000-118497400	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr12:118491000-118497400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr12:118491000-118497600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr12:118491200-118497200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr12:118491200-118497200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr12:118491200-118497400	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr12:118491200-118497400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr12:118491200-118497400	Weak transcription	Aorta	Aorta
32	chr12:118491200-118497400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr12:118491200-118497600	Weak transcription	Esophagus	oesophagus
34	chr12:118491200-118497600	Weak transcription	Fetal Muscle Trunk	muscle
35	chr12:118491400-118497200	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr12:118491400-118497200	Weak transcription	Fetal Heart	heart
37	chr12:118491400-118497400	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr12:118491400-118497600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr12:118491600-118497000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr12:118491600-118497000	Weak transcription	Brain Anterior Caudate	brain
41	chr12:118491600-118497000	Weak transcription	Brain Substantia Nigra	brain
42	chr12:118491600-118497200	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr12:118491600-118497200	Weak transcription	Brain Cingulate Gyrus	brain
44	chr12:118491600-118497200	Weak transcription	HSMM	muscle
45	chr12:118491600-118497400	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr12:118491600-118497400	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr12:118491600-118497600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr12:118491800-118497000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr12:118491800-118497400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr12:118491800-118497400	Weak transcription	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links