Variant report
| Variant | rs73408439 |
|---|---|
| Chromosome Location | chr12:118411149-118411150 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:118310217..118312212-chr12:118409921..118411601,2 | MCF-7 | breast: | |
| 2 | chr12:118326813..118328635-chr12:118409624..118411524,2 | MCF-7 | breast: | |
| 3 | chr12:118399037..118400644-chr12:118409909..118412676,2 | MCF-7 | breast: | |
| 4 | chr12:118410162..118412292-chr12:118414009..118415785,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000256071 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs5745809 | 1.00[AMR][1000 genomes] |
| rs58355576 | 1.00[AMR][1000 genomes] |
| rs59158052 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59323695 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60856947 | 1.00[AMR][1000 genomes] |
| rs61091236 | 1.00[AMR][1000 genomes] |
| rs73406687 | 1.00[AMR][1000 genomes] |
| rs73406688 | 1.00[AMR][1000 genomes] |
| rs73406701 | 1.00[AMR][1000 genomes] |
| rs73408410 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv560388 | chr12:118391600-118482352 | Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 11 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
