Variant report
| Variant | rs59323695 |
|---|---|
| Chromosome Location | chr12:118412037-118412038 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000171435 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs5745809 | 1.00[AMR][1000 genomes] |
| rs58355576 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59158052 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60856947 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61091236 | 1.00[AMR][1000 genomes] |
| rs73406687 | 1.00[AMR][1000 genomes] |
| rs73406688 | 1.00[AMR][1000 genomes] |
| rs73406701 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73408410 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73408439 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv560388 | chr12:118391600-118482352 | Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 11 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
