Variant report

Variant	rs58377570
Chromosome Location	chr5:111279115-111279116
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs73787746	0.83[AFR][1000 genomes]
rs73787751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73787757	1.00[AMR][1000 genomes]
rs73787758	1.00[AMR][1000 genomes]
rs73789520	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs73789549	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs73789552	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111273800-111281400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:111277400-111279400	Enhancers	HSMMtube	muscle
3	chr5:111277400-111279400	Enhancers	NHDF-Ad	bronchial
4	chr5:111277400-111279400	Enhancers	NHLF	lung
5	chr5:111278000-111279200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:111278000-111279200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr5:111278000-111279200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr5:111278000-111279400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:111278000-111279400	Enhancers	HMEC	breast
10	chr5:111278000-111279400	Enhancers	Osteobl	bone
11	chr5:111278200-111279400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr5:111278400-111279200	Enhancers	HSMM	muscle
13	chr5:111278400-111279400	Enhancers	NHEK	skin
14	chr5:111278600-111279200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr5:111278600-111279400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr5:111278600-111279600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr5:111278800-111279400	Enhancers	Muscle Satellite Cultured Cells	--
18	chr5:111279000-111279800	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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