Variant report

Variant	rs73789520
Chromosome Location	chr5:111174403-111174404
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs58377570	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs73787310	0.86[AFR][1000 genomes]
rs73787313	0.86[AFR][1000 genomes]
rs73787315	0.86[AFR][1000 genomes]
rs73787338	0.86[AFR][1000 genomes]
rs73787339	0.86[AFR][1000 genomes]
rs73787340	0.86[AFR][1000 genomes]
rs73787341	0.86[AFR][1000 genomes]
rs73787350	0.86[AFR][1000 genomes]
rs73787351	0.86[AFR][1000 genomes]
rs73787358	0.86[AFR][1000 genomes]
rs73787362	0.86[AFR][1000 genomes]
rs73787367	0.86[AFR][1000 genomes]
rs73787746	0.83[AFR][1000 genomes]
rs73787751	1.00[AFR][1000 genomes]
rs73789549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73789552	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv882711	chr5:111116271-111185325	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv882712	chr5:111116271-111233084	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111166000-111175800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:111172600-111174800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr5:111172600-111182800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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