Variant report

Variant	rs73787746
Chromosome Location	chr5:111295195-111295196
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs58377570	0.83[AFR][1000 genomes]
rs73787385	0.83[AFR][1000 genomes]
rs73787751	0.83[AFR][1000 genomes]
rs73789520	0.83[AFR][1000 genomes]
rs73789549	0.83[AFR][1000 genomes]
rs73789552	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111289600-111295800	Weak transcription	NHLF	lung
2	chr5:111290600-111296000	Weak transcription	HSMMtube	muscle
3	chr5:111291000-111295600	Weak transcription	NHDF-Ad	bronchial
4	chr5:111291000-111295800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:111291000-111295800	Weak transcription	Adipose Nuclei	Adipose
6	chr5:111291000-111296000	Weak transcription	Fetal Heart	heart
7	chr5:111291600-111295200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr5:111291600-111295800	Weak transcription	HSMM	muscle
9	chr5:111292000-111296000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr5:111293200-111298400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr5:111293600-111298200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr5:111293600-111298200	Enhancers	Osteobl	bone
13	chr5:111293800-111295400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr5:111294400-111295400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links