Variant report

Variant	rs73789552
Chromosome Location	chr5:111185633-111185634
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs58377570	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs73787310	0.86[AFR][1000 genomes]
rs73787313	0.86[AFR][1000 genomes]
rs73787315	0.86[AFR][1000 genomes]
rs73787338	0.86[AFR][1000 genomes]
rs73787339	0.86[AFR][1000 genomes]
rs73787340	0.86[AFR][1000 genomes]
rs73787341	0.86[AFR][1000 genomes]
rs73787350	0.86[AFR][1000 genomes]
rs73787351	0.86[AFR][1000 genomes]
rs73787358	0.86[AFR][1000 genomes]
rs73787362	0.86[AFR][1000 genomes]
rs73787367	0.86[AFR][1000 genomes]
rs73787746	0.83[AFR][1000 genomes]
rs73787751	1.00[AFR][1000 genomes]
rs73789520	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73789549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv882712	chr5:111116271-111233084	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111182800-111187200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:111183000-111189400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr5:111184400-111189400	Weak transcription	Fetal Brain Female	brain
4	chr5:111184400-111195200	Weak transcription	Psoas Muscle	Psoas
5	chr5:111184600-111190800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:111184800-111191200	Weak transcription	Fetal Stomach	stomach
7	chr5:111185000-111189400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr5:111185200-111187200	Weak transcription	Fetal Lung	lung
9	chr5:111185200-111189200	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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