Variant report
| Variant | rs58429119 |
|---|---|
| Chromosome Location | chr2:86198844-86198845 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:86179973..86182095-chr2:86197318..86199407,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10184159 | 1.00[EUR][1000 genomes] |
| rs12124 | 0.80[ASN][1000 genomes] |
| rs2278532 | 1.00[EUR][1000 genomes] |
| rs2278533 | 0.89[EUR][1000 genomes] |
| rs2288116 | 1.00[EUR][1000 genomes] |
| rs3731822 | 1.00[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs3755005 | 1.00[EUR][1000 genomes] |
| rs3770083 | 1.00[EUR][1000 genomes] |
| rs3770084 | 1.00[EUR][1000 genomes] |
| rs3770086 | 1.00[EUR][1000 genomes] |
| rs3770091 | 1.00[EUR][1000 genomes] |
| rs56861544 | 1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs57150140 | 1.00[EUR][1000 genomes] |
| rs57318396 | 1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs57361751 | 1.00[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs57405155 | 0.80[ASN][1000 genomes] |
| rs57963460 | 1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs58026145 | 1.00[EUR][1000 genomes] |
| rs58468324 | 0.98[ASN][1000 genomes] |
| rs58861315 | 1.00[EUR][1000 genomes] |
| rs58913632 | 1.00[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs58926604 | 0.98[ASN][1000 genomes] |
| rs60336356 | 0.84[ASN][1000 genomes] |
| rs60471596 | 1.00[ASN][1000 genomes] |
| rs60497765 | 0.97[ASN][1000 genomes] |
| rs61094144 | 1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs61185790 | 1.00[EUR][1000 genomes] |
| rs61199255 | 0.85[ASN][1000 genomes] |
| rs61254540 | 1.00[EUR][1000 genomes] |
| rs61371265 | 0.98[ASN][1000 genomes] |
| rs6755228 | 1.00[EUR][1000 genomes] |
| rs6760112 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1001104 | chr2:86182021-86271923 | Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv535807 | chr2:86182021-86271923 | Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:86198200-86202800 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
| 2 | chr2:86198800-86199000 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
