Variant report

Variant	rs57361751
Chromosome Location	chr2:86241006-86241007
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86227807..86229903-chr2:86239930..86241641,2	K562	blood:
2	chr2:86240930..86243180-chr2:86244397..86245985,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10168997	0.81[ASN][1000 genomes]
rs10184159	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12124	1.00[ASN][1000 genomes]
rs1469981	0.83[ASN][1000 genomes]
rs17026904	0.89[ASN][1000 genomes]
rs17579744	0.81[ASN][1000 genomes]
rs1978842	0.81[ASN][1000 genomes]
rs2278532	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2278533	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2278534	0.89[ASN][1000 genomes]
rs2278535	0.89[ASN][1000 genomes]
rs2278537	0.93[ASN][1000 genomes]
rs2288116	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3731822	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3755005	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3770076	0.89[ASN][1000 genomes]
rs3770083	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3770084	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3770085	0.89[ASN][1000 genomes]
rs3770086	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3770091	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3821019	0.89[ASN][1000 genomes]
rs56861544	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57150140	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57318396	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57405155	1.00[ASN][1000 genomes]
rs57963460	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58009603	0.89[ASN][1000 genomes]
rs58026145	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58429119	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs58861315	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58913632	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58919291	0.89[ASN][1000 genomes]
rs59053280	0.89[ASN][1000 genomes]
rs60329449	0.86[ASN][1000 genomes]
rs60336356	0.93[ASN][1000 genomes]
rs60471596	0.80[ASN][1000 genomes]
rs61056382	0.93[ASN][1000 genomes]
rs61094144	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61185790	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61199255	0.91[ASN][1000 genomes]
rs61254540	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6708805	0.83[ASN][1000 genomes]
rs6741224	0.80[ASN][1000 genomes]
rs6755228	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6760112	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72847838	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001104	chr2:86182021-86271923	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv535807	chr2:86182021-86271923	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86239600-86244000	Weak transcription	Pancreas	Pancrea
2	chr2:86239800-86242600	Weak transcription	Psoas Muscle	Psoas
3	chr2:86240200-86242400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr2:86240800-86242000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
5	chr2:86240800-86242200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast

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