Variant report

Variant	rs56861544
Chromosome Location	chr2:86210364-86210365
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86208939..86211667-chr2:86213596..86215398,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-POLR1A-1	chr2:86209699-86210612	XLOC_002194

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10184159	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12124	0.91[ASN][1000 genomes]
rs17026904	0.81[ASN][1000 genomes]
rs2278532	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2278533	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2278534	0.81[ASN][1000 genomes]
rs2278535	0.81[ASN][1000 genomes]
rs2278537	0.84[ASN][1000 genomes]
rs2288116	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3731822	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3755005	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3770076	0.81[ASN][1000 genomes]
rs3770083	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3770084	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3770085	0.81[ASN][1000 genomes]
rs3770086	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3770091	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3821019	0.81[ASN][1000 genomes]
rs57150140	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57318396	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57361751	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57405155	0.91[ASN][1000 genomes]
rs57963460	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58009603	0.81[ASN][1000 genomes]
rs58026145	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58429119	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58468324	0.83[ASN][1000 genomes]
rs58861315	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58913632	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58919291	0.81[ASN][1000 genomes]
rs58926604	0.83[ASN][1000 genomes]
rs59053280	0.81[ASN][1000 genomes]
rs60336356	0.98[ASN][1000 genomes]
rs60471596	0.85[ASN][1000 genomes]
rs60497765	0.82[ASN][1000 genomes]
rs61056382	0.84[ASN][1000 genomes]
rs61094144	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61185790	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61199255	1.00[ASN][1000 genomes]
rs61254540	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61371265	0.83[ASN][1000 genomes]
rs6755228	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6760112	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001104	chr2:86182021-86271923	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv535807	chr2:86182021-86271923	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86204000-86221000	Weak transcription	Right Atrium	heart
2	chr2:86205800-86214200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr2:86207000-86211200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:86207000-86211400	Weak transcription	Fetal Muscle Leg	muscle
5	chr2:86207000-86214400	Weak transcription	Adipose Nuclei	Adipose
6	chr2:86207000-86223400	Weak transcription	Liver	Liver
7	chr2:86207600-86219800	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr2:86208600-86211200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr2:86209000-86215600	Weak transcription	Spleen	Spleen

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