Variant report

Variant	rs57318396
Chromosome Location	chr2:86206297-86206298
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86203899..86206358-chr2:86207517..86209115,2	MCF-7	breast:
2	chr2:86203874..86206783-chr2:86210443..86213436,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10184159	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11894806	1.00[AMR][1000 genomes]
rs12124	0.91[ASN][1000 genomes]
rs17026904	0.81[ASN][1000 genomes]
rs2278532	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2278533	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2278534	0.81[ASN][1000 genomes]
rs2278535	0.81[ASN][1000 genomes]
rs2278537	0.84[ASN][1000 genomes]
rs2288116	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34853189	1.00[AMR][1000 genomes]
rs3731822	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3755005	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3770076	0.81[ASN][1000 genomes]
rs3770083	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3770084	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3770085	0.81[ASN][1000 genomes]
rs3770086	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3770091	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3821019	0.81[ASN][1000 genomes]
rs56861544	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57150140	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57361751	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57405155	0.91[ASN][1000 genomes]
rs57963460	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58009603	0.81[ASN][1000 genomes]
rs58026145	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58429119	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58468324	0.83[ASN][1000 genomes]
rs58861315	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58913632	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58919291	0.81[ASN][1000 genomes]
rs58926604	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs59053280	0.81[ASN][1000 genomes]
rs59598725	1.00[AMR][1000 genomes]
rs60336356	0.98[ASN][1000 genomes]
rs60471596	0.85[ASN][1000 genomes]
rs60497765	0.82[ASN][1000 genomes]
rs61056382	0.84[ASN][1000 genomes]
rs61094144	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61185790	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61199255	1.00[ASN][1000 genomes]
rs61254540	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61371265	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6547652	1.00[AMR][1000 genomes]
rs6755228	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6759624	1.00[AMR][1000 genomes]
rs6760097	1.00[AMR][1000 genomes]
rs6760112	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001104	chr2:86182021-86271923	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv535807	chr2:86182021-86271923	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86202200-86206400	Enhancers	Fetal Brain Male	brain
2	chr2:86203800-86206600	Weak transcription	Right Ventricle	heart
3	chr2:86204000-86206600	Weak transcription	Lung	lung
4	chr2:86204000-86208800	Weak transcription	Gastric	stomach
5	chr2:86204000-86221000	Weak transcription	Right Atrium	heart
6	chr2:86204400-86206600	Enhancers	Fetal Heart	heart
7	chr2:86205400-86206600	Enhancers	A549	lung
8	chr2:86205400-86207000	Enhancers	Liver	Liver
9	chr2:86205400-86207000	Enhancers	Hela-S3	cervix
10	chr2:86205400-86208000	Enhancers	Stomach Mucosa	stomach
11	chr2:86205600-86206800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr2:86205600-86206800	Enhancers	Colon Smooth Muscle	Colon
13	chr2:86205600-86207000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr2:86205600-86207000	Enhancers	Adipose Nuclei	Adipose
15	chr2:86205600-86208600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr2:86205800-86206400	Enhancers	Brain Substantia Nigra	brain
17	chr2:86205800-86206800	Enhancers	Primary B cells from cord blood	blood
18	chr2:86205800-86206800	Enhancers	Brain Germinal Matrix	brain
19	chr2:86205800-86206800	Weak transcription	Fetal Muscle Leg	muscle
20	chr2:86205800-86207000	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr2:86205800-86207200	Enhancers	NHDF-Ad	bronchial
22	chr2:86205800-86208800	Weak transcription	Spleen	Spleen
23	chr2:86205800-86214200	Weak transcription	Fetal Muscle Trunk	muscle
24	chr2:86206000-86206600	Weak transcription	Rectal Smooth Muscle	rectum
25	chr2:86206000-86206800	Weak transcription	Psoas Muscle	Psoas
26	chr2:86206000-86206800	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr2:86206000-86207000	Enhancers	Primary B cells from peripheral blood	blood
28	chr2:86206000-86207000	Weak transcription	Brain Hippocampus Middle	brain
29	chr2:86206000-86207000	Enhancers	Osteobl	bone
30	chr2:86206000-86207600	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr2:86206000-86207600	Enhancers	Monocytes-CD14+_RO01746	blood
32	chr2:86206200-86206800	Weak transcription	Left Ventricle	heart
33	chr2:86206200-86207000	Enhancers	GM12878-XiMat	blood
34	chr2:86206200-86207800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links