Variant report

Variant	rs34853189
Chromosome Location	chr2:86024598-86024599
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:85977326..85978260-chr2:86024538..86025326,2	MCF-7	breast:
2	chr2:85998096..86001212-chr2:86021812..86025448,3	MCF-7	breast:
3	chr2:86021788..86023834-chr2:86023904..86026512,2	MCF-7	breast:
4	chr2:86015229..86018634-chr2:86021632..86024903,4	K562	blood:
5	chr2:86024028..86026534-chr2:86035288..86037420,2	K562	blood:
6	chr2:86020003..86022831-chr2:86024128..86027495,3	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11894806	1.00[AMR][1000 genomes]
rs57318396	1.00[AMR][1000 genomes]
rs58926604	1.00[AMR][1000 genomes]
rs59598725	1.00[AMR][1000 genomes]
rs61371265	1.00[AMR][1000 genomes]
rs6547652	1.00[AMR][1000 genomes]
rs6759624	1.00[AMR][1000 genomes]
rs6760097	1.00[AMR][1000 genomes]
rs6760112	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874469	chr2:85973618-86025251	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv874470	chr2:85973618-86028257	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv979290	chr2:86015956-86029004	ZNF genes & repeats Bivalent Enhancer Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86015400-86024800	Enhancers	Brain Angular Gyrus	brain
2	chr2:86016000-86026200	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr2:86017200-86024600	Enhancers	A549	lung
4	chr2:86017200-86024800	Enhancers	Brain Cingulate Gyrus	brain
5	chr2:86017400-86024800	Enhancers	Brain Substantia Nigra	brain
6	chr2:86017800-86025200	Enhancers	Adipose Nuclei	Adipose
7	chr2:86018600-86024600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:86018800-86024600	Enhancers	Colon Smooth Muscle	Colon
9	chr2:86018800-86024600	Enhancers	Fetal Lung	lung
10	chr2:86018800-86027000	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr2:86019000-86024600	Enhancers	Muscle Satellite Cultured Cells	--
12	chr2:86019200-86024800	Enhancers	HSMMtube	muscle
13	chr2:86019400-86025400	Enhancers	Fetal Muscle Leg	muscle
14	chr2:86019600-86024600	Enhancers	Brain Germinal Matrix	brain
15	chr2:86019600-86024800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr2:86019600-86024800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr2:86019600-86025000	Enhancers	Fetal Heart	heart
18	chr2:86019800-86025400	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr2:86020000-86028200	Enhancers	Liver	Liver
20	chr2:86021000-86024600	Enhancers	Right Ventricle	heart
21	chr2:86021000-86024800	Enhancers	Ovary	ovary
22	chr2:86021000-86025400	Enhancers	Right Atrium	heart
23	chr2:86021400-86024600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
24	chr2:86021400-86024800	Enhancers	Left Ventricle	heart
25	chr2:86021400-86026200	Weak transcription	Hela-S3	cervix
26	chr2:86021600-86024600	Enhancers	Lung	lung
27	chr2:86022200-86024600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr2:86022400-86024800	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr2:86022400-86033800	Weak transcription	Gastric	stomach
30	chr2:86022600-86024600	Bivalent Enhancer	Fetal Stomach	stomach
31	chr2:86023000-86024600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr2:86023000-86033800	Weak transcription	Pancreas	Pancrea
33	chr2:86023200-86024600	Enhancers	Aorta	Aorta
34	chr2:86023200-86025200	Enhancers	Spleen	Spleen
35	chr2:86023400-86024800	Flanking Active TSS	Brain Hippocampus Middle	brain
36	chr2:86023600-86025000	Weak transcription	HepG2	liver
37	chr2:86023600-86025400	Enhancers	HSMM	muscle
38	chr2:86023800-86024800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
39	chr2:86023800-86025200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
40	chr2:86023800-86026200	Weak transcription	Fetal Intestine Large	intestine
41	chr2:86024000-86024800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr2:86024000-86024800	Bivalent Enhancer	Placenta	Placenta
43	chr2:86024000-86024800	Enhancers	Stomach Smooth Muscle	stomach
44	chr2:86024000-86026600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr2:86024000-86026800	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr2:86024200-86024600	Flanking Active TSS	Brain Anterior Caudate	brain
47	chr2:86024200-86025800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr2:86024200-86026200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr2:86024200-86026200	Weak transcription	Psoas Muscle	Psoas
50	chr2:86024200-86028200	Weak transcription	HUVEC	blood vessel

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