Variant report

Variant	rs6759624
Chromosome Location	chr2:86207645-86207646
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11894806	1.00[AMR][1000 genomes]
rs34853189	1.00[AMR][1000 genomes]
rs57318396	1.00[AMR][1000 genomes]
rs58926604	1.00[AMR][1000 genomes]
rs59598725	1.00[AMR][1000 genomes]
rs61371265	1.00[AMR][1000 genomes]
rs6547652	1.00[AMR][1000 genomes]
rs6760097	1.00[AMR][1000 genomes]
rs6760112	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001104	chr2:86182021-86271923	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv535807	chr2:86182021-86271923	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86204000-86208800	Weak transcription	Gastric	stomach
2	chr2:86204000-86221000	Weak transcription	Right Atrium	heart
3	chr2:86205400-86208000	Enhancers	Stomach Mucosa	stomach
4	chr2:86205600-86208600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr2:86205800-86208800	Weak transcription	Spleen	Spleen
6	chr2:86205800-86214200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr2:86206200-86207800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr2:86206600-86207800	Weak transcription	A549	lung
9	chr2:86207000-86207800	Weak transcription	Hela-S3	cervix
10	chr2:86207000-86211200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr2:86207000-86211400	Weak transcription	Fetal Muscle Leg	muscle
12	chr2:86207000-86214400	Weak transcription	Adipose Nuclei	Adipose
13	chr2:86207000-86223400	Weak transcription	Liver	Liver
14	chr2:86207200-86207800	Weak transcription	NHDF-Ad	bronchial
15	chr2:86207600-86219800	Weak transcription	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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