Variant report

Variant	rs58457927
Chromosome Location	chr7:129217296-129217297
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12531330	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12540333	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13222287	0.95[AFR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13233824	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13235012	0.81[EUR][1000 genomes]
rs34002378	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34159564	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34780485	0.84[EUR][1000 genomes]
rs34947551	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35366849	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6950910	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831128	chr7:129063040-129240800	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129215000-129217600	Weak transcription	Fetal Muscle Leg	muscle
2	chr7:129215000-129217600	Weak transcription	HSMMtube	muscle
3	chr7:129216600-129217600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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