Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:129217791..129220404-chr7:129255943..129258228,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11532743	0.81[ASN][1000 genomes]
rs12531330	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12535925	0.89[CHB][hapmap]
rs12537627	0.89[CHB][hapmap]
rs12538512	0.89[CHB][hapmap]
rs12540281	0.89[CHB][hapmap]
rs12540333	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13233824	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13235012	0.89[EUR][1000 genomes]
rs13239330	0.81[EUR][1000 genomes]
rs13241028	0.89[CHB][hapmap]
rs1806626	0.89[CHB][hapmap]
rs2402974	0.89[CHB][hapmap]
rs34002378	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34159564	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34780485	0.91[EUR][1000 genomes]
rs34947551	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35366849	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4731610	0.88[CHB][hapmap]
rs4731611	0.89[CHB][hapmap]
rs58457927	0.95[AFR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6950910	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831128	chr7:129063040-129240800	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129218200-129221000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:129219000-129223400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search: