Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:129212812..129216194-chr7:129221295..129224141,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11532743	0.81[ASN][1000 genomes]
rs12531330	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12535925	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs12537627	1.00[CHB][hapmap]
rs12538512	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs12540281	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs12540333	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13222287	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13233824	0.86[CHB][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13235012	0.88[EUR][1000 genomes]
rs13239330	0.81[EUR][1000 genomes]
rs13241028	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs1806626	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs2402974	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs34002378	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34159564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34780485	0.91[EUR][1000 genomes]
rs34947551	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35366849	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4731610	1.00[CHB][hapmap]
rs4731611	1.00[CHB][hapmap]
rs58457927	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831128	chr7:129063040-129240800	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129219200-129227600	Weak transcription	HSMMtube	muscle
2	chr7:129223600-129224000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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