Variant report

Variant	rs13235012
Chromosome Location	chr7:129209948-129209949
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:129209733..129212698-chr7:129296003..129298548,2	MCF-7	breast:
2	chr7:129205495..129207558-chr7:129208348..129210608,2	K562	blood:
3	chr7:129200551..129202256-chr7:129208397..129211365,2	MCF-7	breast:
4	chr7:129208350..129211242-chr7:129248110..129249888,2	K562	blood:

Variant related genes	Relation type
ENSG00000106459	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10257409	0.80[ASN][1000 genomes]
rs10260508	0.82[ASN][1000 genomes]
rs1125056	0.82[ASN][1000 genomes]
rs11765308	0.84[ASN][1000 genomes]
rs11765389	0.84[ASN][1000 genomes]
rs11768713	0.84[ASN][1000 genomes]
rs12531330	0.84[EUR][1000 genomes]
rs12540333	0.85[EUR][1000 genomes]
rs13222287	0.89[EUR][1000 genomes]
rs13233824	0.85[EUR][1000 genomes]
rs13239330	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1665111	0.96[ASN][1000 genomes]
rs2018797	0.83[ASN][1000 genomes]
rs2121265	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2598178	0.87[ASN][1000 genomes]
rs2896417	0.80[ASN][1000 genomes]
rs34002378	0.85[EUR][1000 genomes]
rs34159564	0.89[EUR][1000 genomes]
rs34780485	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34947551	0.89[EUR][1000 genomes]
rs35366849	0.87[EUR][1000 genomes]
rs4554407	0.80[ASN][1000 genomes]
rs56052358	0.85[ASN][1000 genomes]
rs56178414	0.88[ASN][1000 genomes]
rs58457927	0.81[EUR][1000 genomes]
rs612972	0.84[ASN][1000 genomes]
rs659495	0.83[ASN][1000 genomes]
rs691089	0.81[ASN][1000 genomes]
rs6950910	0.88[EUR][1000 genomes]
rs875832	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831128	chr7:129063040-129240800	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129198600-129216800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:129208600-129211000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:129209000-129210200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:129209200-129210400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr7:129209200-129210400	Enhancers	NHEK	skin
6	chr7:129209200-129210400	Enhancers	Osteobl	bone
7	chr7:129209200-129210600	Enhancers	NHDF-Ad	bronchial
8	chr7:129209400-129210000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr7:129209400-129210200	Enhancers	Placenta	Placenta
10	chr7:129209400-129210200	Active TSS	A549	lung
11	chr7:129209400-129210400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr7:129209400-129210400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:129209400-129210400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr7:129209400-129210400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr7:129209400-129210400	Enhancers	Duodenum Mucosa	Duodenum
16	chr7:129209400-129210400	Enhancers	HMEC	breast
17	chr7:129209400-129210400	Enhancers	NHLF	lung
18	chr7:129209600-129210200	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr7:129209600-129210400	Enhancers	Fetal Intestine Large	intestine
20	chr7:129209600-129210400	Enhancers	NH-A	brain
21	chr7:129209800-129210400	Enhancers	Muscle Satellite Cultured Cells	--
22	chr7:129209800-129210400	Enhancers	Hela-S3	cervix
23	chr7:129209800-129211800	Enhancers	HepG2	liver
24	chr7:129209800-129214000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr7:129209800-129214200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr7:129209800-129214200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr7:129209800-129214200	Weak transcription	Stomach Mucosa	stomach
28	chr7:129209800-129214200	Weak transcription	HSMM	muscle
29	chr7:129209800-129214200	Weak transcription	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links