Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10257409	0.84[ASN][1000 genomes]
rs10260508	0.81[ASN][1000 genomes]
rs1125056	0.85[ASN][1000 genomes]
rs11765308	0.87[ASN][1000 genomes]
rs11765389	0.87[ASN][1000 genomes]
rs11768713	0.87[ASN][1000 genomes]
rs12154955	1.00[CHB][hapmap]
rs12706898	1.00[CHB][hapmap]
rs13233863	1.00[CHB][hapmap]
rs13235012	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13239330	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1665111	0.94[ASN][1000 genomes]
rs2018797	0.82[ASN][1000 genomes]
rs2598178	0.90[ASN][1000 genomes]
rs2896417	0.83[ASN][1000 genomes]
rs34780485	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4554407	0.83[ASN][1000 genomes]
rs4731610	0.81[CEU][hapmap]
rs56052358	0.88[ASN][1000 genomes]
rs56178414	0.91[ASN][1000 genomes]
rs612972	0.87[ASN][1000 genomes]
rs659495	0.86[ASN][1000 genomes]
rs691089	0.84[ASN][1000 genomes]
rs875832	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831128	chr7:129063040-129240800	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv3478069	chr7:129157163-129204221	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv3478070	chr7:129157177-129204220	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2121265	AHCYL2	cis	cerebellum	SCAN
rs2121265	IRF5	cis	cerebellum	SCAN
rs2121265	CALU	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129198600-129216800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:129202800-129206000	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr7:129203000-129204800	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr7:129203200-129204800	Weak transcription	Primary monocytes fromperipheralblood	blood

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